Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L18
         (190 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-1|CAB07184.1|  349|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm rece...    26   3.2  
Z99288-2|CAB16547.1|  353|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U97406-4|AAC24295.1|  258|Caenorhabditis elegans Hypothetical pr...    25   7.5  
AC006748-2|AAF60515.2|  215|Caenorhabditis elegans Hypothetical ...    25   7.5  
AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical...    25   9.9  

>Z92782-1|CAB07184.1|  349|Caenorhabditis elegans Hypothetical
           protein F14F8.1 protein.
          Length = 349

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 49  LAASWTTLIIYSSFFILLYFNYKFLC 126
           L ASW    +   +F+ + F Y++LC
Sbjct: 90  LLASWAGFYVVIVWFVAIQFVYRYLC 115


>AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 69 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 43  SRLAASWTTLIIYSSFFILLYFNYKFLC 126
           S L +SW+   I    FI + F Y++LC
Sbjct: 89  SLLMSSWSAFYIIVVAFIAVQFVYRYLC 116


>Z99288-2|CAB16547.1|  353|Caenorhabditis elegans Hypothetical
           protein ZK262.2 protein.
          Length = 353

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 2   HEATWQYGQPSGNLPVWR 55
           HE TWQY Q + ++P +R
Sbjct: 136 HEKTWQYVQDALSIPQYR 153


>U97406-4|AAC24295.1|  258|Caenorhabditis elegans Hypothetical
           protein F40E3.6 protein.
          Length = 258

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 4   RGNVA--IWPAFWEPSRLAASWTTLIIYSSFFILL 102
           RGN+   IWP F  P+ + A  ++   Y S  +L+
Sbjct: 70  RGNIRGEIWPVFLAPNDIVAERSSFQEYRSEMVLM 104


>AC006748-2|AAF60515.2|  215|Caenorhabditis elegans Hypothetical
           protein Y39A3B.3 protein.
          Length = 215

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 64  TTLIIYSSFFILLYFNYK 117
           TT+I+Y +F  L++ NYK
Sbjct: 122 TTVILYDNFKYLIFSNYK 139


>AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical
           protein Y43F8C.12 protein.
          Length = 1119

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 19  IWPAFWEPSRL 51
           +W +FWEP RL
Sbjct: 255 LWESFWEPKRL 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,995
Number of Sequences: 27780
Number of extensions: 39000
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)