Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L17
(401 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 186 1e-48
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 100 7e-23
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 88 4e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 3e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 48 7e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 42 3e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 42 5e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 29 0.27
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 3.3
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 3.3
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.4
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 5.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 24 7.7
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 24 7.7
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 24 7.7
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 24 7.7
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 24 7.7
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 21 9.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 186 bits (452), Expect = 1e-48
Identities = 81/86 (94%), Positives = 83/86 (96%)
Frame = +2
Query: 143 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIW 322
PRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+ NWDDMEKIW
Sbjct: 27 PRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIW 86
Query: 323 HHTFYNELRVAPEEHPVLLTEAPLNP 400
HHTFYNELRVAPEEHP LLTEAPLNP
Sbjct: 87 HHTFYNELRVAPEEHPCLLTEAPLNP 112
Score = 52.4 bits (120), Expect = 3e-08
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +1
Query: 67 DDDVAALVVDNGSGMCKAGFAGDDSASRRLPVHRGSPSPPG 189
++++AALV+DNGSGMCKAGFAGDD+ P G P G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 100 bits (240), Expect = 7e-23
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Frame = +2
Query: 143 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIW 322
P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE GII NW DME+IW
Sbjct: 31 PKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIW 90
Query: 323 HHTFYN-ELRVAPEEHPVLLTEAPL 394
+ + + +L PEEHP+LLTE PL
Sbjct: 91 SYIYSDQQLNTLPEEHPLLLTEPPL 115
Score = 34.3 bits (75), Expect = 0.007
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 73 DVAALVVDNGSGMCKAGFAGDD 138
D + +DNGSG KAGFAGDD
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDD 29
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 88.2 bits (209), Expect = 4e-19
Identities = 40/88 (45%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Frame = +2
Query: 143 PRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEK 316
PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+E+GII ++++M +
Sbjct: 25 PRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQ 84
Query: 317 IWHHTFYNELRVAPEEHPVLLTEAPLNP 400
+W +TF+ +L++ P +LLTE P+NP
Sbjct: 85 LWDYTFFEKLKIDPRGRKILLTEPPMNP 112
Score = 29.1 bits (62), Expect = 0.27
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 79 AALVVDNGSGMCKAGFAGDDSASRRLPVHRGSP 177
A +V+DNG+G K G+A D+ + P G P
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 68.9 bits (161), Expect = 3e-13
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +2
Query: 215 DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 391
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 392 LNP 400
LNP
Sbjct: 133 LNP 135
Score = 30.3 bits (65), Expect = 0.12
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 85 LVVDNGSGMCKAGFAGDDSASRRLP 159
+++DNG+G K G+AG+D+ S P
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFP 32
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 47.6 bits (108), Expect = 7e-07
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Frame = +2
Query: 143 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIITNWDDMEKI 319
P+ VF ++V R R + + + + VG++ + G ++ + P E +I+NWD ME++
Sbjct: 46 PKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQV 101
Query: 320 WHHTFYNELRVAPEEHPVLLTEAPLNP 400
+TF +L + EHP+ +TE NP
Sbjct: 102 LDYTFL-KLGIDRMEHPICMTEPLANP 127
Score = 24.6 bits (51), Expect = 5.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 85 LVVDNGSGMCKAGFAGD 135
LV+DNGS +AG+ G+
Sbjct: 27 LVIDNGSWQLRAGWGGE 43
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 42.3 bits (95), Expect = 3e-05
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 257 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 400
+ +K I +G + NWD +W + +L+ P EHP+L+TE NP
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
Score = 31.9 bits (69), Expect = 0.038
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 70 DDVAALVVDNGSGMCKAGFAGDDSASRRLPVHRG 171
D+V+A+V+D GS + GF+G+D LP + G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 41.5 bits (93), Expect = 5e-05
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +2
Query: 176 PRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIITNWDDMEKIWHHTFYNELR 349
P + GV + ++ YV DE Q I + +K +GII +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 350 VAPEEHPVLLTEAPLNP 400
V P E+ +++TE NP
Sbjct: 97 VNPTEYAMMITEPSWNP 113
Score = 29.5 bits (63), Expect = 0.20
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 70 DDVAALVVDNGSGMCKAGFAGDDSASRRLPVHRG 171
+++ +LV+D GS + G+AG++S LP + G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.1 bits (62), Expect = 0.27
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 143 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 274
PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 506 PRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 3.3
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = +2
Query: 272 PIEHGIITNWDDMEKIWHHTF 334
PI+ G + +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.4 bits (53), Expect = 3.3
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 215 PSVPCRP*HPGGEGDPRWTGRRREAESS--PAKPALHMP 105
P+VP P PG P G +ESS A P + MP
Sbjct: 543 PAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMP 581
Score = 24.2 bits (50), Expect = 7.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 236 PHHRRKSPSVP 204
PHHR +SPS P
Sbjct: 125 PHHRERSPSPP 135
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 191 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 277
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 5.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 85 LVVDNGSGMCKAGFAG 132
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 7.7
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 327 WCQIFS-MSSQLVMIPCSMGYFRVRIPLLL-WASSPT*ESFCPMPTMTPWW 181
WC+ S + SQ+ + +G F PL L WA S P +TPWW
Sbjct: 304 WCKPSSAVLSQIFGVKTGLGLF----PLTLDWAQI----SSLSNPLITPWW 346
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.2 bits (50), Expect = 7.7
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 287 IITNWDDME-KIWH--HTFYNELRVAPEEHPVLLTEAPLNP 400
+I + DD +W+ HTF+++ + P EH + ++++ +NP
Sbjct: 271 VIGSADDRTLNVWNLRHTFHHKGKTRPPEHRI-VSQSIINP 310
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 24.2 bits (50), Expect = 7.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 17 RVNIHRVPTQKHTPKCATTMLLRS*LTMAPACAKPVSPV 133
RVN+ P K PKC + LT++ + P++P+
Sbjct: 11 RVNVFLDPETKDIPKCVADLKFPLPLTLSR--STPINPI 47
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 24.2 bits (50), Expect = 7.7
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +2
Query: 269 YPIEHGIITNWDDMEKIWHHTFYNELRVAPE 361
YP G++ +W ++E + E+R+ P+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 24.2 bits (50), Expect = 7.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 125 SPVTTPPRAVFPSIVGRPRH 184
SPVTTPP P+ V RH
Sbjct: 729 SPVTTPPLPTAPAPVITSRH 748
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.4 bits (43), Expect(2) = 9.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 254 ILTLKYPIEHGIITN 298
I+T YP HGI++N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 9.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 293 TNWDDMEKIWHHTFYNELRVAPEEHP 370
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,495
Number of Sequences: 5004
Number of extensions: 35513
Number of successful extensions: 111
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -