Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L17
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.43 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   1.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   2.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   6.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   9.2  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 72 VVAHFGVCFCVGTRWILTLRQRL 4
          +V  FG C CVG   I  L+ RL
Sbjct: 4  IVLIFGFCVCVGALTIEELKTRL 26


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 166 RGSPSPPGCHGRHG 207
           R +P PPG  G HG
Sbjct: 329 RENPGPPGVPGDHG 342



 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 169 GSPSPPGCHGRH 204
           G P  PG HG H
Sbjct: 333 GPPGVPGDHGDH 344


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 166 RGSPSPPGCHGRHG 207
           R +P PPG  G HG
Sbjct: 329 RENPGPPGVPGDHG 342



 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 169 GSPSPPGCHGRH 204
           G P  PG HG H
Sbjct: 333 GPPGVPGDHGDH 344


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 166 RGSPSPPGCHGRHG 207
           R +P PPG  G HG
Sbjct: 268 RENPGPPGVPGDHG 281



 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 169 GSPSPPGCHGRHGTEGLLR 225
           G P  PG HG H  +  +R
Sbjct: 272 GPPGVPGDHGDHAPKQTVR 290


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 40  DTKTHAKMCDDDVAALVVDNGSGMCKAGFAGD 135
           D K    + D D    + D   GMCK G +GD
Sbjct: 110 DLKLDNVLLDQDGHIKIAD--FGMCKEGISGD 139


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 35  VPTQKHTPKCAT 70
           VP+ KH  KCAT
Sbjct: 160 VPSVKHVAKCAT 171


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 159 GKTARGGVVTGETG 118
           G ++ GGVVTG +G
Sbjct: 23  GSSSAGGVVTGASG 36


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 148 RRLPVHRGSPSPPGCHGRHGTEGL 219
           RRL          G HG HG  GL
Sbjct: 123 RRLEQLTNQTGLHGLHGLHGLHGL 146


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 245 CSGPHHRRKSPSVPCRP 195
           C G   RR  P+  C+P
Sbjct: 409 CPGRVRRRYQPAFRCKP 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,561
Number of Sequences: 438
Number of extensions: 2639
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)