Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L16
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    24   3.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    23   6.1  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    23   8.0  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        23   8.0  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    23   8.0  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 122 IYKTKYRFNNISFHQSNVP 66
           IY T+Y F ++ FH  + P
Sbjct: 409 IYNTEYPFFSVQFHPESTP 427


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -3

Query: 134  YSL*IYKTKYRFNNISFHQSN----VPLND 57
            YSL I+  +   N+I F +SN    +P+ND
Sbjct: 1002 YSLDIHLNQSTINSIDFFESNQISQIPIND 1031


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 122  IYKTKYRFNNISFHQSNVP 66
            ++ TK++FN  +F +S +P
Sbjct: 977  VFPTKFQFNVYNFDESGMP 995


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 101 FNNISFHQSNVPLND*WNF 45
           +NN +F+  +V  ND WN+
Sbjct: 370 YNNTNFYNLDVISNDGWNW 388


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 172 LNVWVL*YQNLENIHYKYIKRNTDLI 95
           LNV+ + Y+ + +   +Y   NTD++
Sbjct: 228 LNVYYVLYEKMSHCEIQYFDFNTDIL 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 830,428
Number of Sequences: 5004
Number of extensions: 12726
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)