Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L16
         (277 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0518 + 4421314-4421346,4421427-4421767,4421960-4422619,442...    27   2.8  
03_02_0548 - 9392048-9392501,9392596-9392939                           26   3.7  
01_07_0342 - 42860548-42862343,42863345-42863396,42863666-428638...    25   6.5  

>05_01_0518 +
           4421314-4421346,4421427-4421767,4421960-4422619,
           4422992-4423116,4423337-4423692,4423768-4423852,
           4423917-4423954
          Length = 545

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 61  FNGTFD*WKLMLLNRYFVLYIYNEYFPNF 147
           FNG  D  K +L+NR  ++ I +E+ PNF
Sbjct: 497 FNGLPDEVKAVLVNRKGLVKIISEWTPNF 525


>03_02_0548 - 9392048-9392501,9392596-9392939
          Length = 265

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 197 QNLKNMTVFKCLGTLVSKFGKY 132
           Q+L  +   +CL T VS+FG+Y
Sbjct: 196 QDLSPLACAQCLSTAVSRFGQY 217


>01_07_0342 -
           42860548-42862343,42863345-42863396,42863666-42863848,
           42864288-42864461,42864528-42864962
          Length = 879

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 104 RFNNISFHQSNVPLND 57
           RFN I  H+SN  LND
Sbjct: 297 RFNRIGLHKSNPELND 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,210,748
Number of Sequences: 37544
Number of extensions: 54364
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)