Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L13
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    28   0.66 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   1.5  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   2.7  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   2.7  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    26   3.5  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   4.7  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   4.7  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   4.7  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.7  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   8.2  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   8.2  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -2

Query: 158 VSHSDAQVPNISSAMLSMYLIRHKMYASLNNLASASVFTAP----FTS*ILRNVPR 3
           ++H+      + S +    ++RH   A+ NN++  S F AP    F S  L+++P+
Sbjct: 14  LNHNGLSYQRVFSCLTQFPMLRHSSTAAKNNVSMISKFQAPEDKFFPSFSLKSMPK 69


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 95  RHKMYASLNNLASASVFTAPFTS 27
           +H  + +LN+  SAS++++P+TS
Sbjct: 213 KHARFQTLNSSDSASIYSSPYTS 235


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 395 SALEVNFGNLSSLFSACSSLIWAIFSRTCSANV--LWPT 285
           SA   NFG L S     S   WA + R+ S  +  LWPT
Sbjct: 218 SASTSNFGTLKSTSKKPSDKSWAEYFRSFSTLLPYLWPT 256


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 319 EKIAQIKLEQAENSDDKLPKLTSRADAIATRG 414
           EKI +  L+  ENSDD  P   + A+ I T G
Sbjct: 519 EKIIEAPLDTKENSDDDKPS-PAAAEDIGTNG 549


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 187 CYIAQGNISSASIILGKSQNPESLRLAADLAKLVG 291
           C++  G   +   + G S  PE++R+A +L +L+G
Sbjct: 383 CFLRSGLFQNQQPLTGPS--PETIRIAVNLQELIG 415


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +1

Query: 256 LRLAADLAKLVGHNTFAE-HVLEKIA 330
           LR  A++AKLVG ++FA+  +++K+A
Sbjct: 305 LRSKAEVAKLVGKSSFADLQLIDKMA 330


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +1

Query: 13  FLSIHDVKGAVKTLAEARLFKEAYILCRIRYMDSIAEEMLGTWASECDTIGNFVVSAACY 192
           FLSI D + A++T+     +  +  +  +RY +   EE     +    T  + + + A  
Sbjct: 342 FLSISDEQRALQTIRRGMRYCPSNFVLHVRYAEH--EEANNRTSEIRSTYESLIAALARE 399

Query: 193 IAQ-GNISSASIILGKSQNPESLRLAADLAK 282
           I+Q  + +S+S       NP+  +L   L K
Sbjct: 400 ISQLDSKASSSSESSTDGNPQEKKLPEHLVK 430


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 235  KSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQIKLEQAENSDDKLPKLTSRADAIATRG 414
            K QN    R +A L ++  +N     +LEK ++++   +E ++ K        D + T+G
Sbjct: 900  KQQNENLQRESASLKQI--NNELESELLEKTSKVETLLSEQNELKEKLSLEEKDLLDTKG 957

Query: 415  E 417
            E
Sbjct: 958  E 958


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 162 WKFCCICCLLHSP 200
           W FCC+C +L  P
Sbjct: 16  WFFCCVCTILTMP 28


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 325 FSRERALRMYCGRLV*PGLRLNVEIPDSEICQ 230
           FS ++ L  YCG L    L L + +P+   C+
Sbjct: 5   FSSKKQLPAYCGPLPVGSLVLELSVPEEFRCE 36


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 181 AACYIAQGNISSASIILGKSQNPESLRLAADLAKLV 288
           A  Y+A   + +AS I GK   PE  + A  L   V
Sbjct: 471 ALAYLASPAVVAASAIAGKIVAPEGFKNAVSLVSAV 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,687
Number of Sequences: 5004
Number of extensions: 34883
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)