Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L12
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.5  
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   6.0  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   7.9  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   7.9  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 420 LTLCLRVSYSRSNEVFRQLLY 358
           + LCLR  YS+SNE+   +L+
Sbjct: 340 MDLCLRYCYSQSNEIGTNVLW 360


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 238 LWKILTMEQTNIKPLYQKIYLILRHHRSRKNFQRN*GANLI*KLTEY 378
           L KI + ++ N    YQ I     H+  +K FQR    N+I    EY
Sbjct: 81  LGKIRSSKRRNAILSYQTIISSFPHNHVQKLFQRTQSTNMIYTKLEY 127


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 186 ETKDCYVRLGPSLNPMMVVEN 248
           +TKD  ++L PS+ P+++ EN
Sbjct: 490 DTKDVAIKLFPSVVPLLIDEN 510


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 432 RYPGLVPLMQKSKRKLYDALSEVVHKRLYHILE 530
           RY G+ P++    +   + +SE++ K+  +ILE
Sbjct: 814 RYSGMAPIVDADNKLRTENISELLPKQYSNILE 846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,226
Number of Sequences: 5004
Number of extensions: 44006
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)