Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L12
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0074 - 8865884-8866567,8866612-8866923                           28   4.6  
12_01_0686 - 5855216-5858263                                           28   6.1  

>10_05_0074 - 8865884-8866567,8866612-8866923
          Length = 331

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 310 VSKSGKFSGIKALYLFAPLLIFSTTIIGFSDGP 212
           V++SG  SG K  Y F PLL+    ++GF  GP
Sbjct: 239 VARSGVVSGRKGRYGFCPLLV---GLVGFHVGP 268


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 357 NIKVDG-IPHSILNMTHVNIMSEMQHRYPGLVPLMQKSKRKLYDALS 494
           N K  G +P  ILN+TH+  +    + + G + L   SK K    L+
Sbjct: 443 NCKFSGKVPPQILNLTHLETLVLHSNNFDGTIELTSFSKLKNLSVLN 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,661,303
Number of Sequences: 37544
Number of extensions: 244252
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)