Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L12
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    29   3.1  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    29   3.1  
L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily ass...    27   7.2  
L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily ass...    27   7.2  
L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 102 WSIKSVMLNFAKIINGYFEVINFSNLKAETK 194
           W  KS+M  F  I N Y + I   +LKA T+
Sbjct: 892 WGSKSLMAAFMNICNAYSQCIGTQHLKAITR 922


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 102 WSIKSVMLNFAKIINGYFEVINFSNLKAETK 194
           W  KS+M  F  I N Y + I   +LKA T+
Sbjct: 892 WGSKSLMAAFMNICNAYSQCIGTQHLKAITR 922


>L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform a protein.
          Length = 834

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 161 NQLFKLESRNEGLLCTFGTITESYDGCGKY*QWSKQI*SLYT 286
           N  +K+   +E L C F T+ E Y+   K  +W +   +L T
Sbjct: 425 NSFYKVSHDSEVLRCEFETVKEEYNKTVKQSEWDEMKATLNT 466


>L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform b protein.
          Length = 837

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 161 NQLFKLESRNEGLLCTFGTITESYDGCGKY*QWSKQI*SLYT 286
           N  +K+   +E L C F T+ E Y+   K  +W +   +L T
Sbjct: 425 NSFYKVSHDSEVLRCEFETVKEEYNKTVKQSEWDEMKATLNT 466


>L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical
           protein C14B9.3 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 369 DGIPHSILNMTHVNIMSEMQHRYPGLVPLM 458
           DG+P SILN+  +N++  +  RY   +P++
Sbjct: 117 DGLP-SILNLFELNVIGNVLFRYAVCIPIV 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,493,461
Number of Sequences: 27780
Number of extensions: 245298
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)