Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L12
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    27   0.13 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    27   0.13 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 558 TCSHANPGSFPVCDRDVCGQPLITH-RIISFYFSASRVLTLDICVASLTLCLRVSYSRSN 382
           TC    PG +P  D+  C Q  I H R  S +  A  V++    VA++ +   + + R  
Sbjct: 484 TCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCLGIVATMAVACLLFHHRDT 543

Query: 381 EVFR 370
            V R
Sbjct: 544 PVVR 547


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 558 TCSHANPGSFPVCDRDVCGQPLITH-RIISFYFSASRVLTLDICVASLTLCLRVSYSRSN 382
           TC    PG +P  D+  C Q  I H R  S +  A  V++    VA++ +   + + R  
Sbjct: 574 TCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCLGIVATMAVACLLFHHRDT 633

Query: 381 EVFR 370
            V R
Sbjct: 634 PVVR 637


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 129 FAKIINGYFEVINFSNLKAETKDC-YVRLGPSLNPMMVV 242
           F +  + Y+  +   N +AE       ++GPS +PM VV
Sbjct: 523 FVEDSDDYWNCVIQYNTRAENHQTGTAKMGPSYDPMAVV 561


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 506 QTSLSHTGNEP 538
           QTS+SH  N+P
Sbjct: 866 QTSISHENNQP 876


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,414
Number of Sequences: 438
Number of extensions: 2972
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)