Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L10
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   223   6e-59
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical p...    27   8.0  
AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  223 bits (544), Expect = 6e-59
 Identities = 102/139 (73%), Positives = 118/139 (84%)
 Frame = +1

Query: 25  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 204
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 205 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 384
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 385 IPGLTDGEVPRRLGPKRAS 441
           I GLTD  +PR+LGPKRAS
Sbjct: 121 IEGLTDSVLPRKLGPKRAS 139


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -2

Query: 425 PRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL*QEWPFDIKR 246
           P    T+P+ +P  +  P  T T AKT + ++T   +T     +P+      + PFD  +
Sbjct: 269 PTTTTTTPTTTPTTTTTPTTTTTTAKTTK-STTTTTKTTKTTSTPTTTTTTPKTPFDTSK 327

Query: 245 RT 240
            T
Sbjct: 328 CT 329


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 166 NLSIRRLEDLHQLQRPYAFHRRY 98
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 166 NLSIRRLEDLHQLQRPYAFHRRY 98
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 242 TRLLVRTPCFIGKPCLSLPPATRR 171
           TR +    CF+G+ C   PP TR+
Sbjct: 37  TRTMPIKKCFLGENCFERPPFTRK 60


>Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 124 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 26
           RP     +     HP LQ T  +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203


>U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical
           protein C45G9.6a protein.
          Length = 542

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 334 HQQCNHEQTCVSSHRHDVVCSKSGLLTSRDVHGC*SGLPVS*GSPACRY 188
           H+QC +   C+S  R    C+ +G    RD+  C + +  + GS  C Y
Sbjct: 417 HRQCLYHSDCISGQR----CTPTG----RDIATCETDISATIGSIQCFY 457


>U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK418.11 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 339 PFSLSPGHCPQRC 377
           P S +PG CPQRC
Sbjct: 13  PKSCNPGECPQRC 25


>AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 124 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 26
           RP     +     HP LQ T  +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,142,089
Number of Sequences: 27780
Number of extensions: 204530
Number of successful extensions: 488
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)