Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L07
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    29   0.46 
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.4  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   1.9  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   3.2  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   3.2  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   4.3  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    25   5.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   5.7  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   7.5  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 447 ISDMAAQNLASPIYSSFSSGDSLSPNYNEY 536
           I + + Q+  SP+Y  F+ GD L P  N Y
Sbjct: 301 IRNTSCQSWPSPLYVKFNGGDKLFPGDNPY 330


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 267 MYPLCEDCPLKLKPVE-LPWLLDERLDP 187
           +YP C+DC L    ++ LP ++ E +DP
Sbjct: 145 LYPFCKDCSLVFMGLQLLPSMVREGIDP 172


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 172 KLRPSRIKPLIEQPRKFYGL 231
           K+R  R KPLIE+P + YG+
Sbjct: 74  KVRRDRGKPLIEEPEENYGI 93


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 450 SDMAAQNLASPIYSSFSSGDSLSPNYNEYQNQ 545
           S  + Q LAS   +S SSG+S   NYN   NQ
Sbjct: 589 SSSSLQGLASSFLNS-SSGNSNKQNYNNNNNQ 619


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 248 SSQSGYIGTTVSPTSSTGFISQTTLSGT 331
           SS S    +T S TSS+  +S TTL+ +
Sbjct: 112 SSSSSAASSTTSTTSSSSLVSSTTLTSS 139


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -2

Query: 161  DTTVLRTMYEEPCTGNRDQHHR*LQPKQLQISKVCTFC*RDANAPDESRLQP 6
            +++ L  ++ +P    +    + ++PK   +S+   F  +  N P E+RL P
Sbjct: 1628 ESSKLSLIHNKPPIYQKVSEQQNVRPKSSGVSRPLLFLQQQKNLPSENRLHP 1679


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -3

Query: 166 ELIRRYSVRCMRNLVLVTETNITASCSQNSCKYRKCVHFVDAMLTLQMNLVYSL 5
           E I+ ++V  +RNL   +E N  A    N+ +  +C+  +DA +++Q  +   L
Sbjct: 348 EEIQCHAVSTLRNLAASSERNKRAIIEANAIQKLRCL-ILDAPVSVQSEMTACL 400


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 388 VIKTAYSTAA*LSVSD---LVTGST*SSLTYKASTRCWANSCSYVST 257
           V  T  ST+  +S SD   ++  S  S++T  ASTR    + S +ST
Sbjct: 408 VTTTIVSTSTLISASDSTSIIVSSYVSTVTQPASTRVQTTTVSSIST 454


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 456 MAAQNLASPIYSSFSSGDSLSPNYNEYQN 542
           M++   A+P  S  + GDS++ N N++ N
Sbjct: 1   MSSTTDATPTPSGVNGGDSMTVNLNQFYN 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,734
Number of Sequences: 5004
Number of extensions: 38599
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)