Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L07
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-9|CAI46561.1|  425|Caenorhabditis elegans Hypothetical pr...    31   0.74 
Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical pr...    31   0.74 
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q...    28   3.9  
U64836-4|AAG24059.1|  417|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z68317-3|CAA92687.1|  599|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF022979-9|AAB69904.1|  466|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z47808-9|CAI46561.1|  425|Caenorhabditis elegans Hypothetical
           protein D2013.8b protein.
          Length = 425

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 69  YLQLFWLQLAVMLVSVTSTRFLIHRTEYRRINSVKTQAFTDQASHRAAT 215
           YL  FWL L   ++S  +  FLI R + R +  ++ Q  ++  +  + T
Sbjct: 6   YLAAFWLLLITTVISFFAYVFLIDRWKLRGVKQIQEQQMSETTTDSSET 54


>Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical
           protein D2013.8a protein.
          Length = 1087

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 69  YLQLFWLQLAVMLVSVTSTRFLIHRTEYRRINSVKTQAFTDQASHRAAT 215
           YL  FWL L   ++S  +  FLI R + R +  ++ Q  ++  +  + T
Sbjct: 668 YLAAFWLLLITTVISFFAYVFLIDRWKLRGVKQIQEQQMSETTTDSSET 716


>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
           isoform a protein.
          Length = 1128

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/55 (27%), Positives = 20/55 (36%)
 Frame = +2

Query: 122 YKVPHTSYGVPSYQFGENXXXXXXXXXXXXXXXXTGFNFKGQSSQSGYIGTTVSP 286
           Y +PH    +P  Q  +                  GFN +G  +Q GYI T   P
Sbjct: 633 YFIPHHMQPIPVQQGYQQMPQPGMGFNGMPATSQPGFNMEGSPAQMGYIQTANKP 687


>U64836-4|AAG24059.1|  417|Caenorhabditis elegans Hypothetical
           protein F10G2.3 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 69  YLQLFWLQLAVMLVSVTSTRFLIHRTEYRRINSVKTQAFTDQASHRAATEVLR 227
           +L +F L       SVTS++  +   E+  IN+   + FT  A+H AA +  R
Sbjct: 2   HLLIFVLFYFFNSYSVTSSKVPVCTNEFTLINNKCLKLFTTPANHSAAEKTCR 54


>Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical
           protein C09H6.3 protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 145 VRCMRNLVLVTETNITASCSQNSCKYRKCVHFVDAML 35
           VRC+ N++ +T   + A C+  +C+ +K +H V  ML
Sbjct: 313 VRCI-NMIKMTTLEMMACCNVLACRPQKTLHNVRDML 348


>Z68317-3|CAA92687.1|  599|Caenorhabditis elegans Hypothetical
           protein T01H3.3 protein.
          Length = 599

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 378 VFITHRPFSTVIQKVITTTHQV 443
           +FIT+RP +T ++ V TTT +V
Sbjct: 125 IFITNRPETTTVRAVRTTTKKV 146


>AF022979-9|AAB69904.1|  466|Caenorhabditis elegans Hypothetical
           protein T02B11.6 protein.
          Length = 466

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 33  VSIASTKCTHFRYLQLFWLQLAVMLV 110
           +S+ +T CT F     +WL LA+ L+
Sbjct: 111 ISLVATSCTPFAAGNSYWLLLAIRLI 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,142
Number of Sequences: 27780
Number of extensions: 211957
Number of successful extensions: 665
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)