Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L07
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.51 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   0.51 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   1.6  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 429 TTHQVLISDMAAQNLASPIYSSFSSGDSLSPNYNEYQN 542
           +T    +SD    N  S   S  SSG S+S N N  ++
Sbjct: 6   STENAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSES 43


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 429 TTHQVLISDMAAQNLASPIYSSFSSGDSLSPNYNEYQN 542
           +T    +SD    N  S   S  SSG S+S N N  ++
Sbjct: 6   STENAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSES 43


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 486 YSSFSSGDSLSPNYNEYQNQY 548
           YS++++ ++   NYN Y N Y
Sbjct: 324 YSNYNNYNNNYNNYNNYNNNY 344


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 489 SSFSSGDSLSPNYNEYQNQYLT 554
           +S S+  + + NYN Y N Y T
Sbjct: 86  NSLSNNYNYNNNYNNYNNNYNT 107


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 483 IYSSFSSGDSLSPNYNEYQNQYLT 554
           I SS S+    S NYN Y N Y T
Sbjct: 81  IISSLSNNYKYS-NYNNYNNNYNT 103


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 483 IYSSFSSGDSLSPNYNEYQNQYLT 554
           I SS S+    S NYN Y N Y T
Sbjct: 81  IISSLSNNYKYS-NYNNYNNNYNT 103


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 483 IYSSFSSGDSLSPNYNEYQNQYLT 554
           I SS S+    S NYN Y N Y T
Sbjct: 81  IISSLSNNYKYS-NYNNYNNNYNT 103


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 483 IYSSFSSGDSLSPNYNEYQNQYLT 554
           I SS S+    S NYN Y N Y T
Sbjct: 81  IISSLSNNYKYS-NYNNYNNNYNT 103


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 483 IYSSFSSGDSLSPNYNEYQNQYLT 554
           I SS S+    S NYN Y N Y T
Sbjct: 81  IISSLSNNYKYS-NYNNYNNNYNT 103


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 483 IYSSFSSGDSLSPNYNEYQNQYLT 554
           I SS S+    S NYN Y N Y T
Sbjct: 81  IISSLSNNYKYS-NYNNYNNNYNT 103


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 483 IYSSFSSGDSLSPNYNEYQNQYLT 554
           I SS S+    S NYN Y N Y T
Sbjct: 81  IISSLSNNYKYS-NYNNYNNNYNT 103


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 422 HYYYPSSVNIGYGSSKFG*SNLLVVFFWRQ 511
           HYY   S N       +G + L VV +W++
Sbjct: 166 HYYPLDSQNCTVEIESYGYTVLDVVMYWKE 195


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 334 TGST*SSLTYKASTRCWA 281
           +G   S + YK++  CWA
Sbjct: 244 SGRAKSEILYKSTLHCWA 261


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 334 TGST*SSLTYKASTRCWA 281
           +G   S + YK++  CWA
Sbjct: 244 SGRAKSEILYKSTLHCWA 261


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 464 SKFG*SNLLVVFFWRQL 514
           ++FG + LL  FFWR L
Sbjct: 27  TQFGQAPLLERFFWRTL 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,275
Number of Sequences: 438
Number of extensions: 2718
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)