Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L06
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 169 3e-43
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.13
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.9
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 27 2.9
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 3.8
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 26 5.0
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 25 6.6
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|... 25 6.6
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 6.6
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 8.8
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 169 bits (411), Expect = 3e-43
Identities = 89/193 (46%), Positives = 122/193 (63%), Gaps = 1/193 (0%)
Frame = +1
Query: 25 SSGQVCGVILDRTNFYAEQGGQIFDEGYMVKVNDESVEFSVKNVQVKGGYILHTGKLE-G 201
+SG+ G++LDRTNFYAEQGGQ +D G++V D +F V NVQV GY+LHTG LE G
Sbjct: 525 NSGEQLGLLLDRTNFYAEQGGQEYDTGHIVI--DGVADFRVTNVQVYAGYVLHTGFLEYG 582
Query: 202 SLKVGDTLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTN 381
+L V D++ D RR +MNNHT TH+LN LR LG+ DQRGSLV ++LRFDF+
Sbjct: 583 NLTVNDSVVCEYDEIRRWHLMNNHTVTHILNLALRNTLGDGIDQRGSLVSQEKLRFDFSY 642
Query: 382 KGPMTVQQIKNTEDQIKEIINENKIVYAKHTSLSEAKKINGLRAMFDEHYXXXXXXXXXX 561
K + + ++ E+ +I +N VY+K +LS+AK+INGLRA+F E Y
Sbjct: 643 KSSIPIDKLLLVENYCNNVIQDNLSVYSKEVALSKAKEINGLRAVFGEVYPDPVRVVCIG 702
Query: 562 XXXEDLVKNPDVP 600
+ L++ P P
Sbjct: 703 VDIDTLLQEPKKP 715
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.13
Identities = 31/126 (24%), Positives = 49/126 (38%)
Frame = -2
Query: 386 PLLVKSNRKRSGITRDPLWSESFPRTFLKTLFNTCVPV*LFITSLRLSVSICKDKVSPTF 207
P++ +S S + S P T +T +P +SL ++ V PT
Sbjct: 86 PIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPIT---PTVPPTS 142
Query: 206 NEPSSLPVCSI*PPLTCTFLTENSTLSSFTLTI*PSSNIWPPCSA*KLVRSNITPHTCPE 27
+S+P+ PP + + NS T T +S PP + + ITP P
Sbjct: 143 TSSTSIPI----PPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPT 198
Query: 26 LTSFTN 9
TS T+
Sbjct: 199 STSSTS 204
>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 73 AEQGGQIFDEGYMVKVNDESVEFSVKNV-QVKGGY 174
A+ G++ +EG+ K E E KN+ V+GGY
Sbjct: 53 ADDAGELREEGFGTKNQFEDNESQAKNLGNVRGGY 87
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 26.6 bits (56), Expect = 2.9
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +1
Query: 100 EGYMVKVNDESVEFSVKN-VQVKGGYILHTGKLEGSLKVGDTLSLHIDTERRRLVMNNHT 276
E +V V+DE +V + +K GY T +LE L + ++ R+L+ ++
Sbjct: 554 ESAVVGVHDELTGQAVNAFILLKPGYEA-TVELEKELIMAVRSTIGPFASPRKLIFSDLP 612
Query: 277 GTH---VLNNVLRKVLGNDSDQRGSL 345
T ++ +LRK+L + DQ G L
Sbjct: 613 KTRSGKIMRRILRKILAGEVDQIGDL 638
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 136 EFSVKNVQVKGGYILHTGKLEGSLKVGDTLSLHIDTERRRLVMNNHTGTHV 288
E VK V G ++ + E S + +S+ IDT ++ ++N+TG +
Sbjct: 1030 EIFVKLVPAGRGELVMNRRSELSQSIEQDISMDIDTPSQKSSIDNYTGISI 1080
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +1
Query: 64 NFYAEQGGQIFDEGYMVK--VNDESVEFS--VKNVQVKGGYI 177
NFYAE+GGQ D + K V+ V FS V N+ + G +
Sbjct: 829 NFYAEKGGQYLDTFQLSKTVVSIPMVNFSEAVSNLGLVAGIL 870
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 168 PFDLYIFNRKFNTFIIYLDHITFIEYLATLLSIKIGTI*YNTTH 37
P DL+I RK+NT + H EY+ ++ I + + H
Sbjct: 35 PQDLFIKARKYNTIVWQSRHPILCEYIEEVVQSCIEELQTGSVH 78
>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = +1
Query: 205 LKVGDTLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNK 384
L+ DT + D + + L G L ++L ++ N++ + P+R DF
Sbjct: 53 LRYDDTDIVESDADDQLLFQVPFAGAATLKSILVRIFPNETAPHSFSLFPNRTDLDFDTI 112
Query: 385 G 387
G
Sbjct: 113 G 113
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = -1
Query: 612 FETDRNIWVFYQIFNRYTYRHYSNWVRV----VFIKHCTQPIN 496
F+ D WVF +FN + + SN V + F++ C +PIN
Sbjct: 195 FDLDSGKWVFKSLFNHHCGIYRSNCVVINKDSEFLQMC-RPIN 236
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.0 bits (52), Expect = 8.8
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 238 DTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNKGPMTVQQIKNT 417
DTE + +++ LN + K D DQ + P F+F +KG + V +K+
Sbjct: 266 DTEMTNV--HDNISRETLNGIY-KCYFTDIDQL--TICPSLQGFEFDSKGNLDVSLLKSL 320
Query: 418 EDQIKEI 438
D++ I
Sbjct: 321 SDEVNMI 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.135 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,009
Number of Sequences: 5004
Number of extensions: 44727
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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