Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L06
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0098 + 5286827-5287019,5287380-5287476,5287872-5287992,528...   161   4e-40
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758...   110   7e-25
01_01_0125 - 1154626-1154685,1155100-1155195,1155578-1155652,115...    51   6e-07
11_01_0469 + 3638493-3641166,3641286-3641653                           28   6.8  

>10_02_0098 +
           5286827-5287019,5287380-5287476,5287872-5287992,
           5288458-5288511,5288868-5288918,5289004-5289099,
           5289709-5289807,5289989-5290111,5290666-5290809,
           5290902-5290973,5291053-5291128,5291208-5291350,
           5291453-5291561,5291629-5291816,5292045-5292134,
           5292256-5292438,5293187-5293360,5293466-5293537
          Length = 694

 Score =  161 bits (391), Expect = 4e-40
 Identities = 82/198 (41%), Positives = 124/198 (62%), Gaps = 3/198 (1%)
 Frame = +1

Query: 10  FVNEVSSGQVCGVILDRTNFYAEQGGQIFDEGYMVKVNDESVEFSVKNVQVKGGYILHTG 189
           +V+  S  +  G++L+ T+FYAEQGGQI+D G   K+      F+V NVQV  GY+LH G
Sbjct: 252 YVSAASGDEDFGLVLESTSFYAEQGGQIYDTG---KIEGSFGSFNVTNVQVFAGYVLHMG 308

Query: 190 KL-EGS--LKVGDTLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDR 360
              +GS  L VGD ++  +D  RR L+  NHT TH+LN  LR++LG+  DQ+GS+V+P++
Sbjct: 309 SFTKGSKALSVGDKVACKVDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPEK 368

Query: 361 LRFDFTNKGPMTVQQIKNTEDQIKEIINENKIVYAKHTSLSEAKKINGLRAMFDEHYXXX 540
           LRFDF++  P+  + ++  E  + + I +   V+A+   L++AK+INGLRA+F E Y   
Sbjct: 369 LRFDFSHGKPVQPEDLRKIESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDP 428

Query: 541 XXXXXXXXXXEDLVKNPD 594
                     EDL+ NP+
Sbjct: 429 VRVVSVGRKVEDLLANPE 446


>06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,
            7587274-7587452,7587913-7587991,7588403-7588537,
            7588651-7588800,7588887-7588997,7589084-7590004,
            7590351-7590623,7590853-7591062,7591425-7591573,
            7591716-7592052
          Length = 996

 Score =  110 bits (265), Expect = 7e-25
 Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 6/179 (3%)
 Frame = +1

Query: 13   VNEVSSGQVCGVILDRTNFYAEQGGQIFDEGYMVKVNDESVE----FSVKNVQVK-GGYI 177
            VN VS G    + LDRT FYAE GGQ+ D G++    +E  +      + +VQ   G   
Sbjct: 585  VNVVSEGSDVEIFLDRTPFYAESGGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIF 644

Query: 178  LHTGKL-EGSLKVGDTLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMP 354
            +H G + +GS++VG  +   +D + R+    +HT TH+L + L+ ++G+++ Q GSLV  
Sbjct: 645  VHKGTIKQGSVEVGKEIDAAVDAKLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAF 704

Query: 355  DRLRFDFTNKGPMTVQQIKNTEDQIKEIINENKIVYAKHTSLSEAKKINGLRAMFDEHY 531
            DRLRFDF    P++ +++   E  + + ++    +  K   L +AK   G  AMF E Y
Sbjct: 705  DRLRFDFNFHRPLSEEELMKIESLVNQWVSSATHLETKVMDLQDAKNA-GAIAMFGEKY 762


>01_01_0125 -
           1154626-1154685,1155100-1155195,1155578-1155652,
           1155729-1155831,1155986-1156078,1156774-1156886,
           1156981-1157124,1157247-1157357
          Length = 264

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
 Frame = +1

Query: 46  VILDRTNFYAEQGGQIFDEGYMVKVNDESVEFSVKNVQVKGGYILHTGKLEGS------- 204
           V++D T FY + GGQ  D G +         F V +V++K G + H G+ E +       
Sbjct: 45  VLVDSTVFYPQGGGQPADTGVISAGG--GTRFIVDDVRMKDGVVFHYGRFEDAGDGCNSG 102

Query: 205 LKVGDTLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNK 384
              G ++SL +D ERR L    H+  H+++  +  +  +  D       PD    ++  K
Sbjct: 103 FSEGQSVSLEVDAERRNLNSRLHSAGHLIDICMSNIGLSHFDPGKGHHFPDGPFVEY--K 160

Query: 385 GPMTVQQIKNTEDQIKEIINE 447
           G +   Q+++ ++++++  NE
Sbjct: 161 GVIPPDQLQDKKNELEKEANE 181


>11_01_0469 + 3638493-3641166,3641286-3641653
          Length = 1013

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 117 LDHITFIEYLATLLSIKIGTI*YNTTHLSRTHFIY 13
           L ++TF++YLA L +   G I  +  HL R  ++Y
Sbjct: 93  LGNLTFLKYLALLKNALSGEIPPSLGHLRRLQYLY 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.135    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,995,602
Number of Sequences: 37544
Number of extensions: 249666
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)