Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L06
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97013-4|AAB52339.1| 968|Caenorhabditis elegans Alanyl trna syn... 231 2e-61
Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical p... 74 7e-14
AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA s... 74 7e-14
Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical p... 30 1.2
Z68161-5|CAA92299.2| 764|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical pr... 30 1.2
AY185494-1|AAO26317.1| 764|Caenorhabditis elegans poly ADP-ribo... 30 1.2
AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribo... 30 1.2
AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical ... 30 1.2
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 29 2.0
>U97013-4|AAB52339.1| 968|Caenorhabditis elegans Alanyl trna
synthetase protein 2 protein.
Length = 968
Score = 231 bits (566), Expect = 2e-61
Identities = 111/203 (54%), Positives = 144/203 (70%)
Frame = +1
Query: 10 FVNEVSSGQVCGVILDRTNFYAEQGGQIFDEGYMVKVNDESVEFSVKNVQVKGGYILHTG 189
FV+++++G+ ++LDRTNFYAEQGGQI+D G + KVNDES EF+V N QV+GGYI+ G
Sbjct: 519 FVDQLAAGEEGAILLDRTNFYAEQGGQIYDVGVLTKVNDESNEFNVSNCQVRGGYIVLVG 578
Query: 190 KLEGSLKVGDTLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRF 369
EGS VGD ++ D +R++L+M NHTGTHVLN LRKVL DSDQ+GSLV PDR+RF
Sbjct: 579 SAEGSFSVGDQVNERFDEDRKQLIMKNHTGTHVLNYALRKVLA-DSDQKGSLVAPDRMRF 637
Query: 370 DFTNKGPMTVQQIKNTEDQIKEIINENKIVYAKHTSLSEAKKINGLRAMFDEHYXXXXXX 549
DFTNK MTVQQ+K E+ +++I+ VYAK++ L EAKK+ GLRAMFDE Y
Sbjct: 638 DFTNKAGMTVQQVKKAEEYAQQLIDTKGQVYAKNSPLGEAKKVKGLRAMFDETYPDPVRV 697
Query: 550 XXXXXXXEDLVKNPDVPIGFETS 618
E L++NPD G T+
Sbjct: 698 VAVGTPVEQLLQNPDAEEGQNTT 720
>Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical
protein W02B12.6a protein.
Length = 793
Score = 74.1 bits (174), Expect = 7e-14
Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Frame = +1
Query: 46 VILDRTNFYAEQGGQIFDEGYMVKVNDESVEFSVKNV-QVKGGYI-LHTGKLEGSLKVGD 219
++L+ FY EQGGQ D G+++ ++ V F V+N ++ GG + + G+ ++
Sbjct: 519 LVLEECQFYGEQGGQTSDTGHLL-IDGREV-FEVENAKKIAGGAVTVLFGRALLPIRRDL 576
Query: 220 TLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDF-TNKGPMT 396
+ +D RR VM H+ TH+LN L+K LG S Q+GS V DR RFD+ T ++
Sbjct: 577 RVEQKLDETRREGVMRAHSATHLLNWALQK-LGVGSGQKGSSVDCDRFRFDYSTGDEDLS 635
Query: 397 VQQ----IKNTEDQIKEIINENKIVYAKHTSLSEAKKINGLRA 513
+Q + E +++E I TSL EAKKI L++
Sbjct: 636 KEQRTELLIKCEMKMREFIQNGGFTEIIETSLEEAKKIENLQS 678
>AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA
synthetase protein.
Length = 793
Score = 74.1 bits (174), Expect = 7e-14
Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Frame = +1
Query: 46 VILDRTNFYAEQGGQIFDEGYMVKVNDESVEFSVKNV-QVKGGYI-LHTGKLEGSLKVGD 219
++L+ FY EQGGQ D G+++ ++ V F V+N ++ GG + + G+ ++
Sbjct: 519 LVLEECQFYGEQGGQTSDTGHLL-IDGREV-FEVENAKKIAGGAVTVLFGRALLPIRRDL 576
Query: 220 TLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDF-TNKGPMT 396
+ +D RR VM H+ TH+LN L+K LG S Q+GS V DR RFD+ T ++
Sbjct: 577 RVEQKLDETRREGVMRAHSATHLLNWALQK-LGVGSGQKGSSVDCDRFRFDYSTGDEDLS 635
Query: 397 VQQ----IKNTEDQIKEIINENKIVYAKHTSLSEAKKINGLRA 513
+Q + E +++E I TSL EAKKI L++
Sbjct: 636 KEQRTELLIKCEMKMREFIQNGGFTEIIETSLEEAKKIENLQS 678
>Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 217 DTLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNKGPM- 393
D + I + +L NH T VLN V+R++ ++ G++ P L FT +
Sbjct: 202 DNVGYEIPVDTVKLCRENHIDTKVLNMVVRRL-----EELGAIERPLNLHVRFTPEFKFK 256
Query: 394 TVQQIKNTEDQIKEIINENK 453
+ + ++T +I+++ E K
Sbjct: 257 EIDEFQSTHIEIEKLDQEEK 276
>Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical
protein F20C5.1d protein.
Length = 705
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 121 NDESVEFSVKNVQVKGGYILHTGKLEGSLKVGDTLSLHIDTERRRLVMNNHTGTHVL--- 291
+DES E S +N ++ + L +LK+ + SL TER ++NH T +
Sbjct: 67 SDESQEDSAENPEIAKEVSENCENLTETLKISNIESLDNVTERSEHTLDNHKSTEPMEED 126
Query: 292 -NNVLRKVLGNDSDQRGSLVMPD 357
NN + +SD+ LV+ +
Sbjct: 127 VNNKSNIDVAINSDEDDELVLEE 149
>Z68161-5|CAA92299.2| 764|Caenorhabditis elegans Hypothetical
protein F20C5.1b protein.
Length = 764
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 121 NDESVEFSVKNVQVKGGYILHTGKLEGSLKVGDTLSLHIDTERRRLVMNNHTGTHVL--- 291
+DES E S +N ++ + L +LK+ + SL TER ++NH T +
Sbjct: 67 SDESQEDSAENPEIAKEVSENCENLTETLKISNIESLDNVTERSEHTLDNHKSTEPMEED 126
Query: 292 -NNVLRKVLGNDSDQRGSLVMPD 357
NN + +SD+ LV+ +
Sbjct: 127 VNNKSNIDVAINSDEDDELVLEE 149
>Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical
protein F20C5.1a protein.
Length = 781
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 121 NDESVEFSVKNVQVKGGYILHTGKLEGSLKVGDTLSLHIDTERRRLVMNNHTGTHVL--- 291
+DES E S +N ++ + L +LK+ + SL TER ++NH T +
Sbjct: 67 SDESQEDSAENPEIAKEVSENCENLTETLKISNIESLDNVTERSEHTLDNHKSTEPMEED 126
Query: 292 -NNVLRKVLGNDSDQRGSLVMPD 357
NN + +SD+ LV+ +
Sbjct: 127 VNNKSNIDVAINSDEDDELVLEE 149
>AY185494-1|AAO26317.1| 764|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-3 short form protein.
Length = 764
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 121 NDESVEFSVKNVQVKGGYILHTGKLEGSLKVGDTLSLHIDTERRRLVMNNHTGTHVL--- 291
+DES E S +N ++ + L +LK+ + SL TER ++NH T +
Sbjct: 67 SDESQEDSAENPEIAKEVSENCENLTETLKISNIESLDNVTERSEHTLDNHKSTEPMEED 126
Query: 292 -NNVLRKVLGNDSDQRGSLVMPD 357
NN + +SD+ LV+ +
Sbjct: 127 VNNKSNIDVAINSDEDDELVLEE 149
>AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-3 long form protein.
Length = 781
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 121 NDESVEFSVKNVQVKGGYILHTGKLEGSLKVGDTLSLHIDTERRRLVMNNHTGTHVL--- 291
+DES E S +N ++ + L +LK+ + SL TER ++NH T +
Sbjct: 67 SDESQEDSAENPEIAKEVSENCENLTETLKISNIESLDNVTERSEHTLDNHKSTEPMEED 126
Query: 292 -NNVLRKVLGNDSDQRGSLVMPD 357
NN + +SD+ LV+ +
Sbjct: 127 VNNKSNIDVAINSDEDDELVLEE 149
>AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 217 DTLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNKGPM- 393
D + I + +L NH T VLN V+R++ ++ G++ P L FT +
Sbjct: 202 DNVGYEIPVDTVKLCRENHIDTKVLNMVVRRL-----EELGAIERPLNLHVRFTPEFKFK 256
Query: 394 TVQQIKNTEDQIKEIINENK 453
+ + ++T +I+++ E K
Sbjct: 257 EIDEFQSTHIEIEKLDQEEK 276
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +1
Query: 238 DTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNKGPMTVQQIKNT 417
D E+ +LV N + + +K L DS Q+G+ DR+R + ++Q++NT
Sbjct: 306 DEEKNQLVHNLAALNAQIEELTQKALKVDSMQQGATASEDRIR-ELIGGHQEAIKQLENT 364
Query: 418 EDQIKEIINENKI 456
+ Q+ E + + +
Sbjct: 365 K-QMNESLQRDLV 376
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.135 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,930,164
Number of Sequences: 27780
Number of extensions: 247205
Number of successful extensions: 737
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -