Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L05
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 42 9e-05
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 31 0.098
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 29 0.52
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 28 1.2
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 27 1.6
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 2.1
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 2.8
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.8
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 3.7
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 26 3.7
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 6.4
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 41.5 bits (93), Expect = 9e-05
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 4 RGRSVRVSVTDACSLCEITLLLRPFYLFPCGHKFHSDCLTGETMPILS 147
R R + + ++C C L PF LFPC H FH C+ +T + S
Sbjct: 825 RNRYIVLEPNESCWHCNQPLFSEPFVLFPCQHAFHRSCMLEKTYKLAS 872
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 31.5 bits (68), Expect = 0.098
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 40 CSLCEITLLLRPFYLFPCGHKFHSDCLTGE 129
CS C I L L P F CGH +H C+ E
Sbjct: 871 CSTCGIDLEL-PMVHFRCGHSYHQRCVEDE 899
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 29.1 bits (62), Expect = 0.52
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 40 CSLCEITLLLRPFYLFPCGHKFHSDCLTGETMPILSPA-RRKKLSDLQRQLSVLSNI 207
C CE LL PF + C H H DC T P KK S Q++ S S +
Sbjct: 793 CDNCE-GLLDVPFVSYSCLHLVHRDCATETVCPKCKAGYLDKKNSHDQKKTSTFSEL 848
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 40 CSLCEITLLLRPFYLFPCGHKFHSDCLT 123
CS+C + L P ++ PCGH +C++
Sbjct: 606 CSVC-LDPCLAPVFIIPCGHFTCQECMS 632
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +1
Query: 202 NIELSTATSSGLPLREVLKNEIDDIVASECIF 297
++ + A +PL +VL++++ D+ ++CIF
Sbjct: 311 DVNMEKAPVKTIPLHDVLRSKLCDLYENDCIF 342
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 210 AVDGDVERAAAQGSAQERDRRHSRER 287
A DG + RAA QG DRR R++
Sbjct: 409 APDGSLSRAAMQGQILANDRREIRQK 434
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 40 CSLCEITLLLRPFYLFPCGHKFHSDCLT 123
CSLC + ++ + PCGH +CLT
Sbjct: 746 CSLC-MDVVAELLIIVPCGHFLCRECLT 772
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 166 LSDLQRQLSVLSNIELSTATSSG-LPLREVLKNEIDDIVASE 288
LSDL+ + L E + G LP+ + + NE+D ++ E
Sbjct: 428 LSDLENNFACLLEPENVDIKAKGALPVEDFINNELDSVIMKE 469
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 88 PCGHKFHSDCL 120
PCGH FH+ CL
Sbjct: 55 PCGHYFHNHCL 65
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 458 KKKTLISPHTSNNNIKL-IALSFYLHVHSHSFMTLSQSSFAMNGLSMHV 315
KK S +S N KL I SFYL HSF S A+NG S ++
Sbjct: 13 KKHQHKSSLSSFQNCKLGIDASFYLTQIIHSFTPQELQSLAVNGESEYL 61
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 469 CQIKCEMFEVIPSTSIEQTRI-CNLRLNFNHL 561
C++ E+ E IPS ++E++ + C L F+ L
Sbjct: 139 CRVLTEIAETIPSNALEESTVSCLLECVFHQL 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,068
Number of Sequences: 5004
Number of extensions: 37015
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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