Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L05
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 44 1e-04
08_02_0937 + 22801526-22802461 34 0.100
07_03_1375 + 26120094-26120651 30 1.2
11_06_0195 - 21138029-21138389,21139796-21140052 30 1.6
09_06_0013 - 20227302-20227325,20227811-20227834,20228111-202282... 30 1.6
02_02_0572 + 11667455-11670783,11672026-11672419 30 1.6
11_06_0147 - 20626854-20627181,20627267-20627377,20627461-206278... 29 2.1
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124... 29 2.1
06_03_1238 - 28604921-28605385,28605810-28606055 29 2.8
04_04_0317 + 24341389-24341504,24341532-24341973 29 2.8
02_02_0310 - 8842286-8843314 29 2.8
01_06_0187 - 27296834-27296980,27297567-27297731,27297820-272979... 29 2.8
05_07_0126 + 27869058-27869805,27869988-27870328,27870430-278705... 29 3.7
05_05_0290 - 23879064-23880035 29 3.7
05_05_0168 + 22875488-22876072 29 3.7
01_05_0220 - 19434011-19434802 28 5.0
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22... 28 6.5
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 28 6.5
11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188 27 8.7
10_08_0150 + 15227739-15228140 27 8.7
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989... 27 8.7
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 27 8.7
03_03_0154 + 14929835-14930497 27 8.7
03_03_0152 + 14908778-14909344 27 8.7
03_03_0136 - 14757965-14758579 27 8.7
03_01_0350 - 2753217-2754152 27 8.7
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611... 27 8.7
01_05_0218 - 19430404-19431189 27 8.7
>08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +1
Query: 160 KKLSDLQRQLSVLSNIELST--------ATSSGLPLREVLKNEIDDIVASECIFCGEHMI 315
+K+ DLQ++LS++ + S P+ + L++++DD VASEC FCG+ MI
Sbjct: 783 EKILDLQKRLSLMDRKAAKENGGNMNGESIISATPI-DKLRSQLDDAVASECPFCGDLMI 841
Query: 316 TCIDKPFIANDDWDRVMKEWE 378
I PFI ++ D WE
Sbjct: 842 KEISLPFILPEESDE-KASWE 861
>08_02_0937 + 22801526-22802461
Length = 311
Score = 33.9 bits (74), Expect = 0.100
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 37 ACSLCEITL-LLRPFYLFPCGHKFHSDCL 120
AC++C+ L L P PCGH +HS+C+
Sbjct: 173 ACAICKDDLPLAAPARRLPCGHLYHSECI 201
>07_03_1375 + 26120094-26120651
Length = 185
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1
Query: 88 PCGHKFHSDCL 120
PCGH+FHS+CL
Sbjct: 103 PCGHRFHSECL 113
>11_06_0195 - 21138029-21138389,21139796-21140052
Length = 205
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 22 VSVTDACSLC--EITLLLRPFYLFPCGHKFHSDCL 120
+S D C++C E+ + PC HK+HS+C+
Sbjct: 145 LSKADLCAVCLDEVRERHQRVTRLPCSHKYHSECV 179
>09_06_0013 -
20227302-20227325,20227811-20227834,20228111-20228219,
20228346-20228470,20229427-20229576,20229621-20229685,
20229808-20229952
Length = 213
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 34 DACSLCEITLLLRPFYL-FPCGHKFHSDCLT 123
+ C +C+ T R + PC H +H+DC+T
Sbjct: 161 EECVICKSTYKSRQKLIRLPCSHCYHADCIT 191
>02_02_0572 + 11667455-11670783,11672026-11672419
Length = 1240
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 210 AVDGDVERAAAQGSAQERDRRHSRERVHLLRRAHDHVHRQAVHRE 344
A DGD +R G +++DR H R+R RR D + + R+
Sbjct: 200 ACDGDRQRGRDYGRDRDQDRDHDRDREGERRRDRDKDRGRDIDRD 244
>11_06_0147 -
20626854-20627181,20627267-20627377,20627461-20627846,
20627949-20628057,20629375-20629421,20629506-20629646
Length = 373
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 34 DACSLC-EITLLLRPFYLFPCGHKFHSDCLTGETMPILSPARRKK 165
DACS+C E P L C H+FH C+ E +L R++
Sbjct: 31 DACSICLEAFCESDPSTLTGCKHEFHLQCIL-ECQELLEAVERER 74
>09_02_0565 +
10710770-10711003,10711368-10711527,10712277-10712477,
10712564-10712628,10712740-10712767,10712847-10712923,
10713023-10713109,10713572-10713622,10713857-10713937,
10714125-10714346,10714424-10714517,10714608-10714748,
10716383-10716444,10716519-10717106
Length = 696
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 37 ACSLCEITLLL-RPFYLFPCGHKFHSDCLT 123
AC++C T L PC H FH +C+T
Sbjct: 605 ACTICLETFLAGEQVVATPCNHIFHQECIT 634
>06_03_1238 - 28604921-28605385,28605810-28606055
Length = 236
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 258 ERDRRHSRERVHLLRRAHDHVHRQAVHRERRL 353
E+ ++ SRE V HD V RQ VH RL
Sbjct: 58 EKSKQDSRESVRRTIMEHDEVFRQQVHELHRL 89
>04_04_0317 + 24341389-24341504,24341532-24341973
Length = 185
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 1 ARG--RSVRVSVTDACSLCEITLLLRP-FYLFPCGHKFHSDC 117
ARG R++ ++ DAC +C+ ++ R GH FH DC
Sbjct: 132 ARGGVRTLDRALNDACPICQHRMVARDDVRTLSGGHDFHEDC 173
>02_02_0310 - 8842286-8843314
Length = 342
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 216 DGDVERAAAQGSAQERDRRHSRERVHLLRRAHDHVHRQAVH 338
D D R A +A E + R+H RR+H H HR H
Sbjct: 156 DPDSRRQYAAVAAAEEEDEDEMARLHHGRRSHHHHHRHHHH 196
>01_06_0187 -
27296834-27296980,27297567-27297731,27297820-27297918,
27299276-27299616,27299824-27300643
Length = 523
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 34 DACSLCEITLLLRPFY-LFPCGHKFHSDCL 120
DAC +C+ ++ CGH++H DC+
Sbjct: 469 DACIICQEEYQVKECIGTLDCGHRYHEDCI 498
>05_07_0126 +
27869058-27869805,27869988-27870328,27870430-27870510,
27870978-27871073,27871152-27871307,27871575-27871721
Length = 522
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 34 DACSLCEITLLLRPFY-LFPCGHKFHSDCLTGETM 135
DAC +C+ + CGHK+H+ C+ G M
Sbjct: 468 DACIICQEEYEAKELVGTLGCGHKYHAMCIKGWLM 502
>05_05_0290 - 23879064-23880035
Length = 323
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 13 SVRVSVTDACSLCEITLLL-RPFYLFPCGHKFHSDCL 120
+V++ +CS+C L + PC HKFHS C+
Sbjct: 190 TVKIEEVVSCSVCLDDLEVGSQAKQMPCEHKFHSSCI 226
>05_05_0168 + 22875488-22876072
Length = 194
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 40 CSLCEITLLL--RPFYLFPCGHKFHSDCL 120
CS+C L+ + L PCGH FH DC+
Sbjct: 127 CSICISALVAGEKVKALPPCGHCFHPDCV 155
>01_05_0220 - 19434011-19434802
Length = 263
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 88 PCGHKFHSDCLTG 126
PCGH FH C+ G
Sbjct: 204 PCGHAFHGQCIAG 216
>08_01_0030 +
222748-222829,223224-223448,223800-224204,224773-225389
Length = 442
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 25 SVTDACSLC-EITLLLRPFYLFPCGHKFHSDCL 120
S + +C++C E + PC HKFH+ C+
Sbjct: 212 STSSSCAICLEDYSFGEKLRVLPCRHKFHATCV 244
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 418 LLFDVCGEIRVFFFCF*CQIKCEMFEVIPSTSIEQ 522
LL D C EIR C+I + +EVIPS +I +
Sbjct: 374 LLMDDCPEIRTVAIEGLCRILNQFWEVIPSLTISK 408
>11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188
Length = 637
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 80 TCSPADTSSTVTASPARPCRYSVRLAVRNYRTCNGNC 190
T +P T +T+T S CR+ + R C C
Sbjct: 331 TPTPMSTPTTMTDSTTTACRWGAKFQTLRQRPCQREC 367
>10_08_0150 + 15227739-15228140
Length = 133
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 88 PCGHKFHSDCL 120
PCGH FH DC+
Sbjct: 70 PCGHAFHRDCV 80
>05_07_0341 -
29398221-29398345,29398757-29398811,29398904-29398981,
29399063-29399154,29399237-29399260,29399353-29399471,
29399839-29399908,29399985-29400051,29400145-29400219,
29400313-29400351,29400735-29400827,29401611-29401634
Length = 286
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 118 LTGETMPILSPARRKKLSDLQRQLSVLSNIELSTATSSGLPLREVLKNEI 267
L GE P R L DLQR LS + + +GL L ++LK ++
Sbjct: 136 LAGEVTSAAGPVR---LEDLQRILSAIQPSDAVADPDAGLGLGDILKPDL 182
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 13 SVRVSVTDACSLCEITLLLRPFYLFPCGHKFHSDCL 120
+ +V C+ C TL L P F C H FH CL
Sbjct: 845 NAKVFQLSKCTTCTFTLDL-PAVHFMCMHSFHLRCL 879
>03_03_0154 + 14929835-14930497
Length = 220
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 88 PCGHKFHSDCL 120
PCGH+FH CL
Sbjct: 136 PCGHRFHGGCL 146
>03_03_0152 + 14908778-14909344
Length = 188
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 88 PCGHKFHSDCL 120
PCGH+FH CL
Sbjct: 88 PCGHRFHGGCL 98
>03_03_0136 - 14757965-14758579
Length = 204
Score = 27.5 bits (58), Expect = 8.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1
Query: 88 PCGHKFHSDCL 120
PCGH+FH +C+
Sbjct: 110 PCGHRFHGECV 120
>03_01_0350 - 2753217-2754152
Length = 311
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 7 GRSVRVSVTDACSLCEITLLLRP-FYLFP-CGHKFHSDCL 120
G R+SV++ C++C + R L P C H FH DC+
Sbjct: 118 GVGARISVSE-CAVCLSEFVERERVRLLPNCSHAFHIDCI 156
>01_06_0210 -
27559090-27559239,27560445-27560567,27561069-27561128,
27562045-27562068,27562313-27562653,27562684-27563731
Length = 581
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 74 PSTCSPADTSSTVTASPARPCRYSVRL 154
PS+ SP D S+ A+P P R +V L
Sbjct: 44 PSSASPPDDSTAAAAAPVLPSRDTVSL 70
>01_05_0218 - 19430404-19431189
Length = 261
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
Frame = +1
Query: 88 PCGHKFHSDCLT-----GETMPI 141
PCGH FH C+T G T PI
Sbjct: 195 PCGHAFHPPCITRWLFKGTTCPI 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,537,881
Number of Sequences: 37544
Number of extensions: 251907
Number of successful extensions: 1180
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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