Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L05
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical pr...    55   4e-08
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    32   0.36 
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    32   0.36 
L14324-2|AAA28187.1|  100|Caenorhabditis elegans Hypothetical pr...    31   0.84 
L23648-11|AAA28027.2|  244|Caenorhabditis elegans Hypothetical p...    30   1.5  
AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical...    29   1.9  
AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical...    29   1.9  
AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    28   4.5  
U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying defe...    28   4.5  
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe...    28   4.5  
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe...    28   4.5  
AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical...    28   4.5  
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.     28   4.5  
AF125971-9|AAD14764.1|  442|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z49967-6|CAA90253.1|  341|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    27   7.8  
AF068716-6|AAC17744.1|  257|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical protein
            W06B4.3 protein.
          Length = 962

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
 Frame = +1

Query: 4    RGRSVRVSVTDACSLCEITLLLRPFYLFPCGHKFHSDCLTGETMPILSPARRKKLS---- 171
            + R+  V  +D CS C   +  R F +  C H FH +CL    +  LS    +K+     
Sbjct: 830  KNRTTVVKPSDVCSHCARPISGRAFNVHSCRHFFHRECLEIAMISFLSQEEVEKMKTLII 889

Query: 172  DLQRQLSVLSNIELSTATSSGLPLRE-VLKNE--IDDIVASECIFCGEHMITCIDKPFIA 342
            D +R LS +   +L+      +  +E  LK    I +IV +EC  CG   I+ IDK F++
Sbjct: 890  DEERVLSQMKAEQLAGNQKGFIEKQEKYLKIAAFISNIVGAECPLCGNIAISQIDKQFLS 949

Query: 343  NDDWDRVMKEW 375
            ++++   +  W
Sbjct: 950  DEEFAADLNTW 960


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
 Frame = +1

Query: 1   ARGRSVRVSVTDACSLC---------EITLLLRPFYLFPCGHKFHSDCLTGE 129
           A   SV V++   CSLC         E T       +F CGH FH  C T E
Sbjct: 684 AADESVSVNIVSRCSLCAQIIINSNQETTKKFSDIKVFKCGHIFHLACSTSE 735


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
 Frame = +1

Query: 1   ARGRSVRVSVTDACSLC---------EITLLLRPFYLFPCGHKFHSDCLTGE 129
           A   SV V++   CSLC         E T       +F CGH FH  C T E
Sbjct: 732 AADESVSVNIVSRCSLCAQIIINSNQETTKKFSDIKVFKCGHIFHLACSTSE 783


>L14324-2|AAA28187.1|  100|Caenorhabditis elegans Hypothetical
           protein ZK112.4 protein.
          Length = 100

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 419 NIKLIALSFYLHVHSHSFMTLSQSSFAMNGLSMH 318
           N +L++L+F     S  F+TLSQ    + GL  H
Sbjct: 25  NFRLVSLAFQKETDSSLFLTLSQCHIELGGLEKH 58


>L23648-11|AAA28027.2|  244|Caenorhabditis elegans Hypothetical
           protein F44B9.9 protein.
          Length = 244

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 4   RGRSV---RVSVTDACSLCEITLLLRPFYLFPCGHKFHSD 114
           RG SV     +V + C L  I+L++R   + P G KF +D
Sbjct: 133 RGLSVCFNEAAVNETCRLLNISLIVRGHQMMPAGFKFFAD 172


>AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15a protein.
          Length = 933

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 73  PFYLFPCGHKFHSDCLTGETMPILSPARRKKLSDLQRQLSVLSNIELSTATSSGL 237
           P+      H   S   +G   P++    R ++  ++RQL+ LSN+  +   S G+
Sbjct: 455 PYNSDTSSHDSRSVTRSGSATPVIDRESRVRMETMERQLAGLSNLVHTALVSKGM 509


>AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15b protein.
          Length = 832

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 73  PFYLFPCGHKFHSDCLTGETMPILSPARRKKLSDLQRQLSVLSNIELSTATSSGL 237
           P+      H   S   +G   P++    R ++  ++RQL+ LSN+  +   S G+
Sbjct: 354 PYNSDTSSHDSRSVTRSGSATPVIDRESRVRMETMERQLAGLSNLVHTALVSKGM 408


>AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.5 protein.
          Length = 287

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 40  CSLCEITLLLRPFYLFPCGHKFHSDCLTGETMPILSPARRKKLSDLQRQL 189
           CS+C I L   P  +  C H  H  C        L+   R+++ D Q+ +
Sbjct: 119 CSICLICLASSPIIVTACDHFMHFACFNRYLTECLT-GLRQEIQDAQKHM 167


>Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical
           protein F49A5.9 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 74  PSTCSPADTSSTVTASPARPCRYSVRLAVRNYRTCNGNC 190
           PST S AD++S  T +   P   ++   V  +   NG C
Sbjct: 77  PSTSSKADSTSASTTTLLTPAPSNINTCVFGFTYINGKC 115


>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 13  SVRVSVTDACSLCEITLLLRPFYLFPCGHKFHSDCLTGETM 135
           ++  ++   C +C+  +++ P  +  CGHKF   CL G  M
Sbjct: 3   AMNANIDAECPICQCKMIV-PTTIPACGHKFCFICLKGVYM 42


>U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying
           defective protein 27,isoform c protein.
          Length = 612

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 228 ERAAAQGSAQERDRRHSRERVHLLRRAHDHVHRQAVHRERR 350
           +R AA    +ER++R  RER     R H    +QA+H++++
Sbjct: 390 QRHAAAQQLREREQREQRERER--ERQHQQQAQQALHQQQQ 428


>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
            protein 27,isoform b protein.
          Length = 1124

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 228  ERAAAQGSAQERDRRHSRERVHLLRRAHDHVHRQAVHRERR 350
            +R AA    +ER++R  RER     R H    +QA+H++++
Sbjct: 902  QRHAAAQQLREREQREQRERER--ERQHQQQAQQALHQQQQ 940


>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
            protein 27,isoform a protein.
          Length = 1129

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 228  ERAAAQGSAQERDRRHSRERVHLLRRAHDHVHRQAVHRERR 350
            +R AA    +ER++R  RER     R H    +QA+H++++
Sbjct: 907  QRHAAAQQLREREQREQRERER--ERQHQQQAQQALHQQQQ 945


>AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical
           protein Y105E8A.14 protein.
          Length = 224

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 10  RSVRVSVTDACSLCEITLLLRPFYLFPCGHKFHSDCLTG 126
           +++  ++   C++C   ++L P  +  CGHKF   CL G
Sbjct: 14  QAINSTIDKECAVCYSEMIL-PTTIPSCGHKFCFICLKG 51


>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
          Length = 1129

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 228  ERAAAQGSAQERDRRHSRERVHLLRRAHDHVHRQAVHRERR 350
            +R AA    +ER++R  RER     R H    +QA+H++++
Sbjct: 907  QRHAAAQQLREREQREQRERER--ERQHQQQAQQALHQQQQ 945


>AF125971-9|AAD14764.1|  442|Caenorhabditis elegans Hypothetical
           protein Y4C6B.1 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 71  GPSTCSPADTSSTVTAS 121
           GPS CSP+ +S T TAS
Sbjct: 289 GPSVCSPSSSSKTSTAS 305


>AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical
           protein K09F6.9 protein.
          Length = 609

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 255 QERDRRHSRERVHLLRRAHDHVHRQAVHRERRL 353
           +E+ ++ + ERV   RR H   HRQA  R + L
Sbjct: 294 EEKQKKENLERVEKERREHIERHRQAEARAKAL 326



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 255 QERDRRHSRERVHLLRRAHDHVHRQAVHRERRL 353
           +E+ ++ + ERV   RR H   HRQA  R + L
Sbjct: 334 EEKQKKENLERVEKERREHIERHRQAEARAKAL 366


>Z49967-6|CAA90253.1|  341|Caenorhabditis elegans Hypothetical
           protein F54C9.7 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 121 TGETMPILSPARRKKLSDLQRQ 186
           TGE  P  SP  RKKL DL ++
Sbjct: 320 TGEAPPYYSPPERKKLFDLLKE 341


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
 Frame = +1

Query: 259 NEIDDIVASECIFC--GEH 309
           N ++DI++ EC+FC  G+H
Sbjct: 846 NHVEDIISCECLFCENGDH 864


>AF068716-6|AAC17744.1|  257|Caenorhabditis elegans Hypothetical
           protein F26D11.9 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -3

Query: 399 KFLFTRSFPLLHDPVPVVVRDERLVDARDHVLAAEDALARDYVVY 265
           KFL+TR FP++H+ +   V D  L       L+A D L +D+  +
Sbjct: 201 KFLYTRWFPIVHNRITYSVLDNCLNYFTLQPLSA-DMLIQDFTCH 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,617,812
Number of Sequences: 27780
Number of extensions: 219744
Number of successful extensions: 831
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)