Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L04
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    47   2e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   2.0  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   2.0  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    26   3.6  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   4.7  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.3  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    23   9.0  

>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 22/39 (56%), Positives = 27/39 (69%)
 Frame = +2

Query: 215  KPDLKLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLD 331
            KP  + KC  CGQVGHM+TNK CPL+ G   GG ++ LD
Sbjct: 941  KPTTR-KCSNCGQVGHMKTNKICPLF-GRPEGGLATMLD 977


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 146 IPLGQIKQEPDLLHTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACP 286
           +P GQ   + + L   +     L+ D    C  CG VGH R +  CP
Sbjct: 281 VPEGQNDLKRNQLRQLATLNGTLRDDENQVCQNCGNVGHRRFD--CP 325


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 317 SSPLDTDAEPPSIEPEDDDLGYVDGTK 397
           S  L+    PPS+ PE+DDL   + TK
Sbjct: 201 SEALNAGHPPPSLYPENDDLSIQNPTK 227


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 287 LYTGSMAGGPSSPLDTDAEPPSIEPEDDDLGYV 385
           L TGS+  G  S LDT  E  S +PE+D L +V
Sbjct: 162 LLTGSV-DGLVSLLDTTKEEDSTDPEEDPLLHV 193


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -2

Query: 275 CLYAYDPLDRTHRTLTSNRASA*LVVATSCGG-----DPVPV*SDLTVSNPGMAKINPSS 111
           C+  YD +    R+LT       L +  +CGG     DP  +   +T  N  +A  +PS+
Sbjct: 385 CVLVYDLIRLFLRSLTELNVEMLLKIVLNCGGQLRSDDPTSLQDIVTEMNLLLASADPST 444

Query: 110 MT 105
           ++
Sbjct: 445 IS 446


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 170  PV*SDLTVSNPGMAKINPSSMTSCSSYQKY*VMVL*RFQPVF 45
            P+ SD TV  P +  +    +T C+  Q   +     F P+F
Sbjct: 931  PIISDFTVFEPALHTVENFDLTDCADEQILLLSSFVNFVPLF 972


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 22.6 bits (46), Expect(2) = 9.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 230 LKCGACGQVGH 262
           +KC +CG++GH
Sbjct: 135 VKCYSCGKIGH 145



 Score = 20.6 bits (41), Expect(2) = 9.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 236 CGACGQVGHMRTNKACPL 289
           C  C Q GH+  N   P+
Sbjct: 159 CYKCNQPGHIAVNCTSPV 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,911
Number of Sequences: 5004
Number of extensions: 33864
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)