Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L04
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 45 4e-05
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 33 0.13
06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832 32 0.39
06_03_1427 - 30090464-30090475,30090476-30090553,30090903-300913... 29 2.1
06_03_1422 + 30058936-30058975,30059057-30059233,30060848-300610... 29 2.1
02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996 29 2.8
03_01_0414 + 3183292-3183735,3184547-3184969,3185435-3185535,318... 29 3.7
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 29 3.7
07_03_0638 + 20196216-20196650,20196810-20196930,20197072-201971... 28 6.4
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 27 8.5
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 27 8.5
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLY 292
L CGACGQ+GHMRTNK CP Y
Sbjct: 1383 LVCGACGQLGHMRTNKLCPKY 1403
>05_01_0112 -
757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 236 CGACGQVGHMRTNKACP-LYTGSMAGGPSSPLDTDAEPPSIEPEDDDLG 379
C CG GH+ + ACP G P D PSI PED+ +G
Sbjct: 409 CYECGIPGHL--SSACPNKKAGDAVSSDKGPDDETKSAPSITPEDNKIG 455
>06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832
Length = 118
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 492 LNDAVPALTPAST*YGDPPSAGVPTLSSLSPP 587
++DAV A PA+ GDPP A PT ++++PP
Sbjct: 6 ISDAVAATPPAAAPAGDPP-AVTPTAAAVAPP 36
>06_03_1427 -
30090464-30090475,30090476-30090553,30090903-30091304,
30091372-30091446,30091536-30091691,30091821-30092012,
30093735-30093908,30094966-30095123,30096738-30096914,
30096996-30097035
Length = 487
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 233 KCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTD 337
+CG C +G K + +G++ GGPS P D D
Sbjct: 135 RCGLCSDLGR-GGYKNTAMRSGAVCGGPSMPADGD 168
>06_03_1422 +
30058936-30058975,30059057-30059233,30060848-30061005,
30062063-30062236,30063959-30064150,30064280-30064435,
30064525-30064599,30064667-30065068,30065418-30065495,
30065840-30066173,30066275-30066339
Length = 616
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 233 KCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTD 337
+CG C +G K + +G++ GGPS P D D
Sbjct: 135 RCGLCSDLGR-GGYKNTAMRSGAVCGGPSMPADGD 168
>02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996
Length = 816
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 506 TGADPCEYLVRRPAERRRTDPL 571
+ + P E+L+RRPA RRR PL
Sbjct: 6 SASSPVEFLLRRPAPRRRRLPL 27
>03_01_0414 +
3183292-3183735,3184547-3184969,3185435-3185535,
3186178-3187439,3187625-3187665,3187777-3187845,
3187975-3188075,3188413-3188491,3188570-3188668,
3188757-3188825,3188918-3188967,3189211-3189387,
3189496-3189634
Length = 1017
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 507 PALTPAST*YGDPPSAGVPTLSSLSP 584
P+ +PAS+ G PP+ V T+SS SP
Sbjct: 34 PSPSPASSPSGGPPALSVSTVSSSSP 59
>01_06_1507 -
37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 182 LHTTSRRRAKLKPDLKLKCGACGQVGHMRTN 274
+H + R P + KC CGQVGH+ N
Sbjct: 246 VHFSILREVVYTPGQQDKCFLCGQVGHLAAN 276
>07_03_0638 +
20196216-20196650,20196810-20196930,20197072-20197168,
20197284-20197323,20197648-20197731,20198966-20199130
Length = 313
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 200 RRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDAEPPSIEPEDD 370
R +L D L C +C G R + P G AG SPL DA+ + + D
Sbjct: 63 RVVRLVWDQLLACSSCAGGGGGRYRRLGPPPQGVAAGAVLSPLPRDADDDAAAADRD 119
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 144 KPWDGKDKSIVDDVMLELSEIL 79
+PWDGKD ++++ L E++
Sbjct: 416 EPWDGKDGEVIEEDEFSLEELM 437
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 155 GQIKQEPDLLHTTSRRRAKLKPDLKLKCG 241
G +KQE DL T S LK K CG
Sbjct: 551 GNLKQETDLSQTISSHENNLKLQFKESCG 579
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,925
Number of Sequences: 37544
Number of extensions: 260301
Number of successful extensions: 873
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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