Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L04
(591 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S61883-1|AAB26991.2| 2068|Drosophila melanogaster transcription ... 121 8e-28
BT024196-1|ABC86258.1| 1964|Drosophila melanogaster RE63802p pro... 121 8e-28
AE014297-491|AAF54102.3| 2065|Drosophila melanogaster CG17603-PA... 121 8e-28
AE014297-490|AAS65117.1| 2098|Drosophila melanogaster CG17603-PC... 121 8e-28
AE014297-489|AAS65116.1| 2129|Drosophila melanogaster CG17603-PB... 121 8e-28
AE001572-25|AAD19815.1| 2065|Drosophila melanogaster transcripti... 121 8e-28
BT004888-1|AAO47866.1| 2096|Drosophila melanogaster RE74933p pro... 120 1e-27
U59476-1|AAB07067.1| 352|Drosophila melanogaster RNA-binding pr... 32 0.51
AY061458-1|AAL29006.1| 352|Drosophila melanogaster LD40792p pro... 32 0.51
AE014296-1235|AAN12056.1| 352|Drosophila melanogaster CG8597-PE... 32 0.51
AE014296-1234|AAN12055.1| 352|Drosophila melanogaster CG8597-PD... 32 0.51
AE014296-1233|AAN12054.1| 352|Drosophila melanogaster CG8597-PC... 32 0.51
AE014296-1232|AAN12053.1| 352|Drosophila melanogaster CG8597-PB... 32 0.51
AE014296-1231|AAF50578.1| 352|Drosophila melanogaster CG8597-PA... 32 0.51
AF262977-1|AAF76150.1| 5233|Drosophila melanogaster highwire pro... 31 1.2
AE014298-2087|AAF48411.3| 5233|Drosophila melanogaster CG32592-P... 31 1.2
BT022756-1|AAY55172.1| 287|Drosophila melanogaster IP14752p pro... 30 2.0
BT022743-1|AAY55159.1| 292|Drosophila melanogaster IP14552p pro... 30 2.0
BT022737-1|AAY55153.1| 285|Drosophila melanogaster IP14452p pro... 30 2.0
AY118894-1|AAM50754.1| 318|Drosophila melanogaster LD04179p pro... 30 2.0
AE014296-3079|AAF49213.2| 366|Drosophila melanogaster CG6843-PA... 30 2.0
>S61883-1|AAB26991.2| 2068|Drosophila melanogaster transcription
factor TFIID 230kda subunit protein.
Length = 2068
Score = 121 bits (291), Expect = 8e-28
Identities = 87/207 (42%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Frame = +2
Query: 8 EQLRRIKRNQERERLAGNVTVP*XXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLLH 187
EQLRRIKRNQERERLA G + P
Sbjct: 1281 EQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP---- 1336
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PPS 352
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1337 --SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEKE 1394
Query: 353 IEPEDDDLGYVDGTKLTLPSKIIKQ-----XXXXXXXXXXXXXXXXXXXXXTKRRGTGAD 517
+ +DDDL VDGTK+TL SKI+K+ K+R G D
Sbjct: 1395 MTMDDDDLVNVDGTKVTLSSKILKRHGGDDGKRRSGSSSGFTLKVPRDAMGKKKRRVGGD 1454
Query: 518 -PCEYLVR--RPAERRRTDPLVTLSSL 589
C+YL R + A RRRTDP+V LSS+
Sbjct: 1455 LHCDYLQRHNKTANRRRTDPVVVLSSI 1481
>BT024196-1|ABC86258.1| 1964|Drosophila melanogaster RE63802p protein.
Length = 1964
Score = 121 bits (291), Expect = 8e-28
Identities = 87/207 (42%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Frame = +2
Query: 8 EQLRRIKRNQERERLAGNVTVP*XXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLLH 187
EQLRRIKRNQERERLA G + P
Sbjct: 1278 EQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP---- 1333
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PPS 352
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 --SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEKE 1391
Query: 353 IEPEDDDLGYVDGTKLTLPSKIIKQ-----XXXXXXXXXXXXXXXXXXXXXTKRRGTGAD 517
+ +DDDL VDGTK+TL SKI+K+ K+R G D
Sbjct: 1392 MTMDDDDLVNVDGTKVTLSSKILKRHGGDDGKRRSGSSSGFTLKVPRDAMGKKKRRVGGD 1451
Query: 518 -PCEYLVR--RPAERRRTDPLVTLSSL 589
C+YL R + A RRRTDP+V LSS+
Sbjct: 1452 LHCDYLQRHNKTANRRRTDPVVVLSSI 1478
>AE014297-491|AAF54102.3| 2065|Drosophila melanogaster CG17603-PA,
isoform A protein.
Length = 2065
Score = 121 bits (291), Expect = 8e-28
Identities = 87/207 (42%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Frame = +2
Query: 8 EQLRRIKRNQERERLAGNVTVP*XXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLLH 187
EQLRRIKRNQERERLA G + P
Sbjct: 1278 EQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP---- 1333
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PPS 352
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 --SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEKE 1391
Query: 353 IEPEDDDLGYVDGTKLTLPSKIIKQ-----XXXXXXXXXXXXXXXXXXXXXTKRRGTGAD 517
+ +DDDL VDGTK+TL SKI+K+ K+R G D
Sbjct: 1392 MTMDDDDLVNVDGTKVTLSSKILKRHGGDDGKRRSGSSSGFTLKVPRDAMGKKKRRVGGD 1451
Query: 518 -PCEYLVR--RPAERRRTDPLVTLSSL 589
C+YL R + A RRRTDP+V LSS+
Sbjct: 1452 LHCDYLQRHNKTANRRRTDPVVVLSSI 1478
>AE014297-490|AAS65117.1| 2098|Drosophila melanogaster CG17603-PC,
isoform C protein.
Length = 2098
Score = 121 bits (291), Expect = 8e-28
Identities = 87/207 (42%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Frame = +2
Query: 8 EQLRRIKRNQERERLAGNVTVP*XXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLLH 187
EQLRRIKRNQERERLA G + P
Sbjct: 1278 EQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP---- 1333
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PPS 352
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 --SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEKE 1391
Query: 353 IEPEDDDLGYVDGTKLTLPSKIIKQ-----XXXXXXXXXXXXXXXXXXXXXTKRRGTGAD 517
+ +DDDL VDGTK+TL SKI+K+ K+R G D
Sbjct: 1392 MTMDDDDLVNVDGTKVTLSSKILKRHGGDDGKRRSGSSSGFTLKVPRDAMGKKKRRVGGD 1451
Query: 518 -PCEYLVR--RPAERRRTDPLVTLSSL 589
C+YL R + A RRRTDP+V LSS+
Sbjct: 1452 LHCDYLQRHNKTANRRRTDPVVVLSSI 1478
>AE014297-489|AAS65116.1| 2129|Drosophila melanogaster CG17603-PB,
isoform B protein.
Length = 2129
Score = 121 bits (291), Expect = 8e-28
Identities = 87/207 (42%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Frame = +2
Query: 8 EQLRRIKRNQERERLAGNVTVP*XXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLLH 187
EQLRRIKRNQERERLA G + P
Sbjct: 1278 EQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP---- 1333
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PPS 352
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 --SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEKE 1391
Query: 353 IEPEDDDLGYVDGTKLTLPSKIIKQ-----XXXXXXXXXXXXXXXXXXXXXTKRRGTGAD 517
+ +DDDL VDGTK+TL SKI+K+ K+R G D
Sbjct: 1392 MTMDDDDLVNVDGTKVTLSSKILKRHGGDDGKRRSGSSSGFTLKVPRDAMGKKKRRVGGD 1451
Query: 518 -PCEYLVR--RPAERRRTDPLVTLSSL 589
C+YL R + A RRRTDP+V LSS+
Sbjct: 1452 LHCDYLQRHNKTANRRRTDPVVVLSSI 1478
>AE001572-25|AAD19815.1| 2065|Drosophila melanogaster transcription
factor protein.
Length = 2065
Score = 121 bits (291), Expect = 8e-28
Identities = 87/207 (42%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Frame = +2
Query: 8 EQLRRIKRNQERERLAGNVTVP*XXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLLH 187
EQLRRIKRNQERERLA G + P
Sbjct: 1278 EQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP---- 1333
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PPS 352
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 --SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEKE 1391
Query: 353 IEPEDDDLGYVDGTKLTLPSKIIKQ-----XXXXXXXXXXXXXXXXXXXXXTKRRGTGAD 517
+ +DDDL VDGTK+TL SKI+K+ K+R G D
Sbjct: 1392 MTMDDDDLVNVDGTKVTLSSKILKRHGGDDGKRRSGSSSGFTLKVPRDAMGKKKRRVGGD 1451
Query: 518 -PCEYLVR--RPAERRRTDPLVTLSSL 589
C+YL R + A RRRTDP+V LSS+
Sbjct: 1452 LHCDYLQRHNKTANRRRTDPVVVLSSI 1478
>BT004888-1|AAO47866.1| 2096|Drosophila melanogaster RE74933p protein.
Length = 2096
Score = 120 bits (289), Expect = 1e-27
Identities = 87/207 (42%), Positives = 102/207 (49%), Gaps = 13/207 (6%)
Frame = +2
Query: 8 EQLRRIKRNQERERLAGNVTVP*XXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLLH 187
EQLRRIKRNQERERLA G + P
Sbjct: 1278 EQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP---- 1333
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PPS 352
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 --SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEKE 1391
Query: 353 IEPEDDDLGYVDGTKLTLPSKIIKQ-----XXXXXXXXXXXXXXXXXXXXXTKRRGTGAD 517
+ +DDDL VDGTK+TL SKI+K+ K+R G D
Sbjct: 1392 MTMDDDDLVNVDGTKVTLSSKILKRHGGDDGKRRSGSSSGFTLKVPRDAMGKKKRRVGGD 1451
Query: 518 -PCEYLVR--RPAERRRTDPLVTLSSL 589
C+YL R A RRRTDP+V LSS+
Sbjct: 1452 LHCDYLQRHNETANRRRTDPVVVLSSI 1478
>U59476-1|AAB07067.1| 352|Drosophila melanogaster RNA-binding
protein lark protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AY061458-1|AAL29006.1| 352|Drosophila melanogaster LD40792p
protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AE014296-1235|AAN12056.1| 352|Drosophila melanogaster CG8597-PE,
isoform E protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AE014296-1234|AAN12055.1| 352|Drosophila melanogaster CG8597-PD,
isoform D protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AE014296-1233|AAN12054.1| 352|Drosophila melanogaster CG8597-PC,
isoform C protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AE014296-1232|AAN12053.1| 352|Drosophila melanogaster CG8597-PB,
isoform B protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AE014296-1231|AAF50578.1| 352|Drosophila melanogaster CG8597-PA,
isoform A protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AF262977-1|AAF76150.1| 5233|Drosophila melanogaster highwire protein.
Length = 5233
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 266 RTNKACPLYTGSMAGGPSSPLDTDAEPPSIEP 361
R + L TG+ GG ++P D D +PP + P
Sbjct: 923 RKERKGELETGAAGGGAATPTDLDKDPPRVAP 954
>AE014298-2087|AAF48411.3| 5233|Drosophila melanogaster CG32592-PA
protein.
Length = 5233
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 266 RTNKACPLYTGSMAGGPSSPLDTDAEPPSIEP 361
R + L TG+ GG ++P D D +PP + P
Sbjct: 923 RKERKGELETGAAGGGAATPTDLDKDPPRVAP 954
>BT022756-1|AAY55172.1| 287|Drosophila melanogaster IP14752p
protein.
Length = 287
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDA 340
++C C + GH+ T+K C +Y+ SM+ +T+A
Sbjct: 149 VRCLKCHKWGHINTDKECTMYSISMSEARKLHAETEA 185
>BT022743-1|AAY55159.1| 292|Drosophila melanogaster IP14552p
protein.
Length = 292
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDA 340
++C C + GH+ T+K C +Y+ SM+ +T+A
Sbjct: 152 VRCLKCHKWGHINTDKECTMYSISMSEARKLHAETEA 188
>BT022737-1|AAY55153.1| 285|Drosophila melanogaster IP14452p
protein.
Length = 285
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDA 340
++C C + GH+ T+K C +Y+ SM+ +T+A
Sbjct: 148 VRCLKCHKWGHINTDKECTMYSISMSEARKLHAETEA 184
>AY118894-1|AAM50754.1| 318|Drosophila melanogaster LD04179p
protein.
Length = 318
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDA 340
++C C + GH+ T+K C +Y+ SM+ +T+A
Sbjct: 126 VRCLKCHKWGHINTDKECTMYSISMSEARKLHAETEA 162
>AE014296-3079|AAF49213.2| 366|Drosophila melanogaster CG6843-PA
protein.
Length = 366
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDA 340
++C C + GH+ T+K C +Y+ SM+ +T+A
Sbjct: 126 VRCLKCHKWGHINTDKECTMYSISMSEARKLHAETEA 162
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,397,357
Number of Sequences: 53049
Number of extensions: 407766
Number of successful extensions: 1343
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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