Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L04
(591 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 25 0.42
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.9
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 3.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 9.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 9.0
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 25.4 bits (53), Expect = 0.42
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 236 CGACGQVGHMRTNKACP 286
CGACG + H T K CP
Sbjct: 78 CGACGDIAH--TVKYCP 92
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + +VV +GSCL P GI
Sbjct: 150 GFDGTYQTNVVVTHNGSCLYVPPGI 174
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + +VV +GSCL P GI
Sbjct: 150 GFDGTYQTNVVVTHNGSCLYVPPGI 174
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 3.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 218 PDLKLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDAE 343
PD+ L A G+ G KA YTG + P + + E
Sbjct: 105 PDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCE 146
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + VV +GSCL P GI
Sbjct: 82 GFDGTYQTSVVVTHNGSCLYVPPGI 106
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + VV GSCL P GI
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGI 106
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + VV GSCL P GI
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGI 106
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + VV GSCL P GI
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGI 106
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + VV GSCL P GI
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGI 106
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + VV GSCL P GI
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGI 106
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.0 bits (42), Expect = 9.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 155 LTVSNPGMAKINPSSMTSCSSYQK 84
LT+S +A I+P + +CS ++
Sbjct: 412 LTLSGNAIASIDPLAFRNCSDLKE 435
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.0 bits (42), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF +VV + +G+CL P GI
Sbjct: 119 GFDGTYPTNVVVKNNGTCLYVPPGI 143
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,146
Number of Sequences: 438
Number of extensions: 2353
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -