Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L03
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   0.87 
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.5  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   3.5  
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    26   4.7  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    26   4.7  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.7  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   6.2  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   6.2  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    25   8.1  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   8.1  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.1  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   8.1  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.1  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 17  NNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPG 121
           NN   NY +  N++YNN    NN+   G    G G
Sbjct: 615 NNNNQNYGNNNNQNYNN---NNNSSQGGNSQGGSG 646



 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 17  NNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGM 163
           N+ + NY++  N++Y N    NN  Y    N   G     G  Q G G+
Sbjct: 607 NSNKQNYNNNNNQNYGN---NNNQNYNNNNNSSQG-----GNSQGGSGL 647


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 68  GPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQA 172
           G  KN   +  ++N GP   Y +G+DQNG     A
Sbjct: 351 GYDKNEFIHELRENEGPSVLYDSGLDQNGTNYDDA 385


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 122 RPYCAGMDQNGMGMSQANGSGGYNDRQRNHR 214
           RP  A  DQ  +   QA G  GY++R  N+R
Sbjct: 427 RPLTASADQV-LAAQQAKGQEGYHNRPNNNR 456


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 23/69 (33%), Positives = 29/69 (42%)
 Frame = +2

Query: 11  PKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGGY 190
           P N R  N  + P      G RK +  Y    N GPG+ + A    N +  S    SGG 
Sbjct: 18  PANKRPKN-EEYPEIPGYLGNRKPS--YTQNPNSGPGKLHYASPRPNNVSSSVGVASGG- 73

Query: 191 NDRQRNHRL 217
            DRQ   +L
Sbjct: 74  -DRQEADQL 81


>SPAC22F8.12c |shf1||small histone ubiquitination factor
          Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 17 NNRRNNYSDEPNEHYNNGPRKNNAE 91
          ++RRN+Y  + N+H    P K+N +
Sbjct: 2  SSRRNDYHYDGNDHQYRSPLKSNVD 26


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 98  GQQNMGPGRPYCAGMDQNGMGMSQANGSGGYNDRQRNHRL 217
           G Q+   G    +   Q  +G    N S G+ND + NH L
Sbjct: 383 GSQDKAYGGVVQSNSRQPKVGFHVNNSSSGHNDNEGNHSL 422


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
 Frame = +2

Query: 8   GPKNNRRNNYSDEPNE----HYNNGPR-----KNNAEYYGQQNMGPG 121
           GP+N  RNN S E N     +  NGPR      ++ + +GQ  + PG
Sbjct: 591 GPRNTSRNNSSSEFNAQIPMNLRNGPRNASRSNSSTDLFGQSGI-PG 636


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 2   HEGPKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMG 115
           H G    R+NNY       Y+NG    N   +GQ   G
Sbjct: 82  HYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQWRDG 119


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 44  EPNEHYNNGPRKNNAEYYGQQNMGPGRPYCA-GMDQNGMG-MSQANGSGGYND 196
           + + +YN G +K +A+YY  ++       C  G + +  G  +  N   GY D
Sbjct: 202 DEDSYYNWGGKKTSAQYYVNKSGRSAEDVCVWGNEGDDYGNWAPMNFGSGYTD 254


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 128 TADRDPYFVDHNIPHYSYVD 69
           T +  PYFVDHN    ++VD
Sbjct: 299 TPEGRPYFVDHNTRTTTWVD 318


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 146 GPCRHSTADRDPYFVDHNIPHYSYVDHYCNVR 51
           GP   ST+     F  H+   Y YV  +C +R
Sbjct: 20  GPASSSTSHSSTIFCVHHRVRYIYVPRHCLLR 51


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 159 PIPFWSMPAQYGRPGP 112
           P+P W   ++Y RPGP
Sbjct: 31  PLPGWDPNSEYFRPGP 46


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 393 CYKQNIFWFIANVAGIYLSIRFQILLSICES 485
           CY  ++ W    V+GI+L   F  +L++C S
Sbjct: 439 CYP-SVHWAAPMVSGIFLGWGFLYVLAVCYS 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,128
Number of Sequences: 5004
Number of extensions: 48856
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)