Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L03
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 32 0.39
10_08_0218 - 15967064-15967906 30 1.6
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973... 29 2.1
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 29 2.7
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 29 2.7
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137... 29 2.7
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 29 2.7
10_08_0227 - 16004868-16005449 29 3.6
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 29 3.6
10_08_0338 + 16916429-16916650,16916728-16917900 28 6.3
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 28 6.3
01_06_1793 - 39916024-39916824 27 8.3
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 5 EGPKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQ 103
+ NN NN +D N NN NN Y+G+
Sbjct: 181 DSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGE 213
>10_08_0218 - 15967064-15967906
Length = 280
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +2
Query: 62 NNGPR--KNNAEYYGQQ-NMGPGRPYCAGMDQNGMGMSQANGSGGY 190
N G R + YGQ + GPG Y G Q G G NG GY
Sbjct: 125 NGGSRYGSGSGSGYGQAGSYGPGGAYAQGGGQGGGGGGGQNGGSGY 170
>03_02_0599 -
9730204-9730314,9730766-9731549,9731631-9732051,
9732139-9732385,9733730-9733921,9734071-9734204,
9734316-9734477,9736162-9736200,9737507-9737825
Length = 802
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 5 EGPKNNRRNNYSDEPNEHYNNGPR-KNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGS 181
EG N N S + NNG R + A G+ NM +D+NG G +GS
Sbjct: 677 EGHAANYSVNGSFSGGHNGNNGQRGPSTAPNVGRPNMETVNGI---VDENGAGGGNGSGS 733
Query: 182 GGYNDRQRN 208
G ND +N
Sbjct: 734 GSGNDLYQN 742
>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 101 QQNMGPGRPYCAGMDQNGMGMSQANGSGGYNDRQRNH 211
Q N GP G D N M + +G+ +N++QR++
Sbjct: 1609 QVNPGPSTGNGTGQDNNNMNWNSPSGNPNWNNQQRDN 1645
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +2
Query: 8 GPKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGG 187
G NN N S N ++NN R N G ++ G G + G SQ+ G GG
Sbjct: 1621 GQDNNNMNWNSPSGNPNWNNQQRDN-----GGRHSGHGGDFNGGDSGGRSWRSQSGGDGG 1675
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 29 NNYSDEPNEHYNNGPR--KNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGGYNDR 199
+ Y N + NG R +N EYY QN G G G QNG G NG+G DR
Sbjct: 494 DGYHQNGNRYNQNGNRYHQNGDEYY--QN-GNGN----GHRQNGSGYYHQNGNGYRQDR 545
>06_01_0175 -
1371089-1371706,1371812-1371994,1372069-1372324,
1372407-1372976,1373423-1373529,1373664-1374136,
1374279-1374372
Length = 766
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 351 FRMWFLGLLNVSILCYKQNIFWF 419
FRMW LG + ++L + FW+
Sbjct: 71 FRMWVLGTASCAVLSFLNQFFWY 93
>06_01_0173 -
1364219-1364836,1364941-1365123,1365215-1365470,
1365551-1366120,1367066-1367178,1367344-1367816,
1367906-1367984
Length = 763
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 351 FRMWFLGLLNVSILCYKQNIFWF 419
FRMW LG + ++L + FW+
Sbjct: 66 FRMWVLGTASCAVLSFLNQFFWY 88
>10_08_0227 - 16004868-16005449
Length = 193
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +2
Query: 59 YNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSG 184
Y NG N YG G G AG G G SQ NG+G
Sbjct: 44 YVNGGGVGNGNGYGSSESGSGVTATAGGGGWGGGGSQYNGTG 85
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = +2
Query: 44 EPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGGYNDRQ 202
EP+ Y R N + Q P+ G G G + NG GG R+
Sbjct: 146 EPSPVYTPNARSNGGGDHHQNGRYGSHPHSRGSGYGGGGNRRGNGGGGGGGRR 198
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 95 YGQQNMGPGRPYCAGMDQNGMGMSQANGSGGY 190
YG + G G P G G G NG GY
Sbjct: 393 YGGRGDGAGNPAAGGGSGYGAGYGSGNGGSGY 424
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Frame = +2
Query: 14 KNNRRNNYSDEPN---EHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANG 178
KNN + N S N ++YN G NN Y G + NG G NG
Sbjct: 52 KNNGQENGSGGRNYDYDYYNRGYSNNNGGYQNYNYNGNNSNGYQNYNYNGNGQGHYNG 109
>01_06_1793 - 39916024-39916824
Length = 266
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +2
Query: 2 HEGPKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGS 181
+EG ++ + Y+ N GP N YG G G Y NG G A G
Sbjct: 120 NEGYSSSAPSGYNPYNNGGGYGGPSYGNGGGYGGSTYGNGGGYGGSSYGNG-GAIVAGGG 178
Query: 182 GG 187
GG
Sbjct: 179 GG 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,820,645
Number of Sequences: 37544
Number of extensions: 318804
Number of successful extensions: 967
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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