SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L03
         (585 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024459-1|ABC86521.1|  882|Drosophila melanogaster AT20596p pro...    39   0.004
BT003798-1|AAO41481.1|  927|Drosophila melanogaster AT25231p pro...    39   0.004
AE014296-640|AAF47760.1|  882|Drosophila melanogaster CG11526-PA...    39   0.004
AE014296-639|AAN11560.2|  927|Drosophila melanogaster CG11526-PB...    39   0.004
BT021357-1|AAX33505.1| 1953|Drosophila melanogaster LP14866p pro...    35   0.070
AY069043-1|AAL39188.1|  365|Drosophila melanogaster GH04191p pro...    35   0.070
AE014298-1786|AAF48179.2| 2528|Drosophila melanogaster CG32654-P...    35   0.070
BT025079-1|ABE73250.1|  812|Drosophila melanogaster IP14914p pro...    32   0.66 
AY102660-1|AAM27489.1|  818|Drosophila melanogaster GH10652p pro...    31   0.87 
AE014296-1163|AAF50635.2|  818|Drosophila melanogaster CG10077-P...    31   0.87 
BT003171-1|AAO24926.1|  443|Drosophila melanogaster SD07604p pro...    31   1.1  
BT001477-1|AAN71232.1|  443|Drosophila melanogaster LD21345p pro...    31   1.1  
AL023893-1|CAA19655.1|  485|Drosophila melanogaster EG:132E8.1 p...    31   1.1  
AE014298-190|AAS65244.1|  443|Drosophila melanogaster CG3056-PB,...    31   1.1  
AE014298-189|AAF45613.1|  485|Drosophila melanogaster CG3056-PA,...    31   1.1  
BT010097-1|AAQ22566.1|  903|Drosophila melanogaster GH22187p pro...    31   1.5  
AY095099-1|AAM11427.1|  984|Drosophila melanogaster SD09402p pro...    31   1.5  
AY058483-1|AAL13712.1|  944|Drosophila melanogaster GM13116p pro...    31   1.5  
AE014296-288|AAF47514.1|  985|Drosophila melanogaster CG7879-PB,...    31   1.5  
AE014296-287|AAF47513.1|  985|Drosophila melanogaster CG7879-PA,...    31   1.5  
AE013599-2834|AAX52698.1|  903|Drosophila melanogaster CG10737-P...    31   1.5  
AE013599-2833|AAF57597.2|  870|Drosophila melanogaster CG10737-P...    31   1.5  
AE013599-2832|AAM68441.1|  944|Drosophila melanogaster CG10737-P...    31   1.5  
AE013599-2831|AAM68440.1|  944|Drosophila melanogaster CG10737-P...    31   1.5  
AE013599-2830|AAF57596.2|  870|Drosophila melanogaster CG10737-P...    31   1.5  
AY180916-2|AAN87267.1|  417|Drosophila melanogaster ORF2 protein.      29   3.5  
AY089699-1|AAL90437.1|  417|Drosophila melanogaster SD06908p pro...    29   3.5  
AM262815-1|CAK18655.1| 1518|Drosophila melanogaster PP1 interact...    29   4.6  
AE014297-3239|AAO41591.1| 1744|Drosophila melanogaster CG7029-PA...    29   4.6  
AJ009736-1|CAA08806.1|  347|Drosophila melanogaster Gag protein ...    28   8.1  

>BT024459-1|ABC86521.1|  882|Drosophila melanogaster AT20596p
           protein.
          Length = 882

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 35  YSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGM-DQNGMGMSQANGSGGYNDRQR 205
           Y +   +  NNG    NAE   Q NM  G   C    D NG G +   G+GG+N +Q+
Sbjct: 763 YPEATQKCGNNGTAAQNAENAQQSNMMAGNNGCGNNGDANGYGNNGGGGNGGHNQQQQ 820


>BT003798-1|AAO41481.1|  927|Drosophila melanogaster AT25231p
           protein.
          Length = 927

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 35  YSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGM-DQNGMGMSQANGSGGYNDRQR 205
           Y +   +  NNG    NAE   Q NM  G   C    D NG G +   G+GG+N +Q+
Sbjct: 808 YPEATQKCGNNGTAAQNAENAQQSNMMAGNNGCGNNGDANGYGNNGGGGNGGHNQQQQ 865


>AE014296-640|AAF47760.1|  882|Drosophila melanogaster CG11526-PA,
           isoform A protein.
          Length = 882

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 35  YSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGM-DQNGMGMSQANGSGGYNDRQR 205
           Y +   +  NNG    NAE   Q NM  G   C    D NG G +   G+GG+N +Q+
Sbjct: 763 YPEATQKCGNNGTAAQNAENAQQSNMMAGNNGCGNNGDANGYGNNGGGGNGGHNQQQQ 820


>AE014296-639|AAN11560.2|  927|Drosophila melanogaster CG11526-PB,
           isoform B protein.
          Length = 927

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 35  YSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGM-DQNGMGMSQANGSGGYNDRQR 205
           Y +   +  NNG    NAE   Q NM  G   C    D NG G +   G+GG+N +Q+
Sbjct: 808 YPEATQKCGNNGTAAQNAENAQQSNMMAGNNGCGNNGDANGYGNNGGGGNGGHNQQQQ 865


>BT021357-1|AAX33505.1| 1953|Drosophila melanogaster LP14866p
           protein.
          Length = 1953

 Score = 35.1 bits (77), Expect = 0.070
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = +2

Query: 14  KNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGGYN 193
           ++N+ ++  ++P+  Y++  R NN+ Y G+ +           + N MG ++ +GSGG +
Sbjct: 811 RSNKYHSGGEDPDRSYDHSRRYNNSNYEGESD---------NPEYNHMGDAELDGSGGRS 861

Query: 194 DRQRNHR 214
            +   HR
Sbjct: 862 SKTSRHR 868


>AY069043-1|AAL39188.1|  365|Drosophila melanogaster GH04191p
           protein.
          Length = 365

 Score = 35.1 bits (77), Expect = 0.070
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = +2

Query: 14  KNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGGYN 193
           ++N+ ++  ++P+  Y++  R NN+ Y G+ +           + N MG ++ +GSGG +
Sbjct: 74  RSNKYHSGGEDPDRSYDHSRRYNNSNYEGESD---------NPEYNHMGDAELDGSGGRS 124

Query: 194 DRQRNHR 214
            +   HR
Sbjct: 125 SKTSRHR 131


>AE014298-1786|AAF48179.2| 2528|Drosophila melanogaster CG32654-PC
           protein.
          Length = 2528

 Score = 35.1 bits (77), Expect = 0.070
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = +2

Query: 14  KNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGGYN 193
           ++N+ ++  ++P+  Y++  R NN+ Y G+ +           + N MG ++ +GSGG +
Sbjct: 811 RSNKYHSGGEDPDRSYDHSRRYNNSNYEGESD---------NPEYNHMGDAELDGSGGRS 861

Query: 194 DRQRNHR 214
            +   HR
Sbjct: 862 SKTSRHR 868


>BT025079-1|ABE73250.1|  812|Drosophila melanogaster IP14914p
           protein.
          Length = 812

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +2

Query: 83  NAEYYGQQNMGP---GRPYCAGMDQNGMGMSQANGSGGYNDRQRN 208
           NA  +GQ N      G  Y      NG G S   GSGGYN   RN
Sbjct: 584 NAFKFGQPNAASSPNGSSYHNNYSLNGNGNSNGAGSGGYNSLPRN 628


>AY102660-1|AAM27489.1|  818|Drosophila melanogaster GH10652p
           protein.
          Length = 818

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
 Frame = +2

Query: 2   HEGPKNNRRNNYSDEPNEHYNNGP--RKNNAEYYGQQNMGPGR----PYCAGMDQNGMGM 163
           ++G        Y+   N   NNGP    N   + G    GP R    P  +  +Q G G 
Sbjct: 560 YQGRNPQMGGGYNGGNNYRNNNGPGATMNRNSFNGGSAGGPPRFDQKPRTSPPNQGGQGG 619

Query: 164 SQANGSGGYNDRQRNHR 214
            +  G GGY  +Q+  +
Sbjct: 620 YRGQGGGGYQGQQQQQQ 636


>AE014296-1163|AAF50635.2|  818|Drosophila melanogaster CG10077-PA,
           isoform A protein.
          Length = 818

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
 Frame = +2

Query: 2   HEGPKNNRRNNYSDEPNEHYNNGP--RKNNAEYYGQQNMGPGR----PYCAGMDQNGMGM 163
           ++G        Y+   N   NNGP    N   + G    GP R    P  +  +Q G G 
Sbjct: 560 YQGRNPQMGGGYNGGNNYRNNNGPGATMNRNSFNGGSAGGPPRFDQKPRTSPPNQGGQGG 619

Query: 164 SQANGSGGYNDRQRNHR 214
            +  G GGY  +Q+  +
Sbjct: 620 YRGQGGGGYQGQQQQQQ 636


>BT003171-1|AAO24926.1|  443|Drosophila melanogaster SD07604p
           protein.
          Length = 443

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 11  PKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGG 187
           P N+  NN ++  N H   GP  ++ +      M  G     GM   GMGM    G GG
Sbjct: 347 PNNHHHNNNNN--NHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGM-GMGMPIHGGGGG 402


>BT001477-1|AAN71232.1|  443|Drosophila melanogaster LD21345p
           protein.
          Length = 443

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 11  PKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGG 187
           P N+  NN ++  N H   GP  ++ +      M  G     GM   GMGM    G GG
Sbjct: 347 PNNHHHNNNNN--NHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGM-GMGMPIHGGGGG 402


>AL023893-1|CAA19655.1|  485|Drosophila melanogaster EG:132E8.1
           protein.
          Length = 485

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 11  PKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGG 187
           P N+  NN ++  N H   GP  ++ +      M  G     GM   GMGM    G GG
Sbjct: 347 PNNHHHNNNNN--NHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGM-GMGMPIHGGGGG 402


>AE014298-190|AAS65244.1|  443|Drosophila melanogaster CG3056-PB,
           isoform B protein.
          Length = 443

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 11  PKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGG 187
           P N+  NN ++  N H   GP  ++ +      M  G     GM   GMGM    G GG
Sbjct: 347 PNNHHHNNNNN--NHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGM-GMGMPIHGGGGG 402


>AE014298-189|AAF45613.1|  485|Drosophila melanogaster CG3056-PA,
           isoform A protein.
          Length = 485

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 11  PKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGG 187
           P N+  NN ++  N H   GP  ++ +      M  G     GM   GMGM    G GG
Sbjct: 347 PNNHHHNNNNN--NHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGM-GMGMPIHGGGGG 402


>BT010097-1|AAQ22566.1|  903|Drosophila melanogaster GH22187p
           protein.
          Length = 903

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = +2

Query: 44  EPNEHYNNGP-RKNNAEYYGQQNMGP---GRPYCAGMDQNGMGMSQANGSGGYNDRQRN 208
           EP     NG   + +   +GQ N      G  Y      NG G S   GSGGYN   RN
Sbjct: 607 EPLIDSGNGTVNEESTAEFGQPNAASSPNGSSYHNNYSLNGNGNSNGAGSGGYNSLPRN 665


>AY095099-1|AAM11427.1|  984|Drosophila melanogaster SD09402p
           protein.
          Length = 984

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 218 TVGDSSGGHCTPRSRSPATYPFRSGPCRH-STADRDPYFVDHNIPH 84
           T+G S GG  TP+  +   Y   SG C++ S +D   YF    IPH
Sbjct: 336 TMGGSPGGGSTPQVVADTCYIRMSGMCQNTSYSDIRKYFQGMYIPH 381


>AY058483-1|AAL13712.1|  944|Drosophila melanogaster GM13116p
           protein.
          Length = 944

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = +2

Query: 44  EPNEHYNNGP-RKNNAEYYGQQNMGP---GRPYCAGMDQNGMGMSQANGSGGYNDRQRN 208
           EP     NG   + +   +GQ N      G  Y      NG G S   GSGGYN   RN
Sbjct: 628 EPLIDSGNGTVNEESTAEFGQPNAASSPNGSSYHNNYSLNGNGNSNGAGSGGYNSLPRN 686


>AE014296-288|AAF47514.1|  985|Drosophila melanogaster CG7879-PB,
           isoform B protein.
          Length = 985

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 218 TVGDSSGGHCTPRSRSPATYPFRSGPCRH-STADRDPYFVDHNIPH 84
           T+G S GG  TP+  +   Y   SG C++ S +D   YF    IPH
Sbjct: 336 TMGGSPGGGSTPQVVADTCYIRMSGMCQNTSYSDIRKYFQGMYIPH 381


>AE014296-287|AAF47513.1|  985|Drosophila melanogaster CG7879-PA,
           isoform A protein.
          Length = 985

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 218 TVGDSSGGHCTPRSRSPATYPFRSGPCRH-STADRDPYFVDHNIPH 84
           T+G S GG  TP+  +   Y   SG C++ S +D   YF    IPH
Sbjct: 336 TMGGSPGGGSTPQVVADTCYIRMSGMCQNTSYSDIRKYFQGMYIPH 381


>AE013599-2834|AAX52698.1|  903|Drosophila melanogaster CG10737-PE,
           isoform E protein.
          Length = 903

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = +2

Query: 44  EPNEHYNNGP-RKNNAEYYGQQNMGP---GRPYCAGMDQNGMGMSQANGSGGYNDRQRN 208
           EP     NG   + +   +GQ N      G  Y      NG G S   GSGGYN   RN
Sbjct: 607 EPLIDSGNGTVNEESTAEFGQPNAASSPNGSSYHNNYSLNGNGNSNGAGSGGYNSLPRN 665


>AE013599-2833|AAF57597.2|  870|Drosophila melanogaster CG10737-PA,
           isoform A protein.
          Length = 870

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = +2

Query: 44  EPNEHYNNGP-RKNNAEYYGQQNMGP---GRPYCAGMDQNGMGMSQANGSGGYNDRQRN 208
           EP     NG   + +   +GQ N      G  Y      NG G S   GSGGYN   RN
Sbjct: 628 EPLIDSGNGTVNEESTAEFGQPNAASSPNGSSYHNNYSLNGNGNSNGAGSGGYNSLPRN 686


>AE013599-2832|AAM68441.1|  944|Drosophila melanogaster CG10737-PD,
           isoform D protein.
          Length = 944

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = +2

Query: 44  EPNEHYNNGP-RKNNAEYYGQQNMGP---GRPYCAGMDQNGMGMSQANGSGGYNDRQRN 208
           EP     NG   + +   +GQ N      G  Y      NG G S   GSGGYN   RN
Sbjct: 628 EPLIDSGNGTVNEESTAEFGQPNAASSPNGSSYHNNYSLNGNGNSNGAGSGGYNSLPRN 686


>AE013599-2831|AAM68440.1|  944|Drosophila melanogaster CG10737-PC,
           isoform C protein.
          Length = 944

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = +2

Query: 44  EPNEHYNNGP-RKNNAEYYGQQNMGP---GRPYCAGMDQNGMGMSQANGSGGYNDRQRN 208
           EP     NG   + +   +GQ N      G  Y      NG G S   GSGGYN   RN
Sbjct: 628 EPLIDSGNGTVNEESTAEFGQPNAASSPNGSSYHNNYSLNGNGNSNGAGSGGYNSLPRN 686


>AE013599-2830|AAF57596.2|  870|Drosophila melanogaster CG10737-PB,
           isoform B protein.
          Length = 870

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = +2

Query: 44  EPNEHYNNGP-RKNNAEYYGQQNMGP---GRPYCAGMDQNGMGMSQANGSGGYNDRQRN 208
           EP     NG   + +   +GQ N      G  Y      NG G S   GSGGYN   RN
Sbjct: 628 EPLIDSGNGTVNEESTAEFGQPNAASSPNGSSYHNNYSLNGNGNSNGAGSGGYNSLPRN 686


>AY180916-2|AAN87267.1|  417|Drosophila melanogaster ORF2 protein.
          Length = 417

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 26  RNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGR 124
           RNNY+   N++YN G   NN    G +  G  R
Sbjct: 350 RNNYNHNYNQNYNQGYNNNNRGRGGYRGHGNNR 382


>AY089699-1|AAL90437.1|  417|Drosophila melanogaster SD06908p
           protein.
          Length = 417

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 26  RNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGR 124
           RNNY+   N++YN G   NN    G +  G  R
Sbjct: 350 RNNYNHNYNQNYNQGYNNNNRGRGGYRGHGNNR 382


>AM262815-1|CAK18655.1| 1518|Drosophila melanogaster PP1 interacting
           16 protein.
          Length = 1518

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
 Frame = +2

Query: 2   HEGPKNNRRNNYSDEPNEHYNN-----GPRKNNAEYYGQQN---MGPGRPYCAGMDQNGM 157
           H+G  N      +  P   YN+     G R +  +   QQ    +G G   C G    G+
Sbjct: 224 HKGNNNFVLGKMAATPESDYNSNATTPGGRSSEQQLQQQQQQQQLGVGGMLCGGGGGGGV 283

Query: 158 GMSQANGSGGYN 193
           GM +    GG N
Sbjct: 284 GMRETTNGGGNN 295


>AE014297-3239|AAO41591.1| 1744|Drosophila melanogaster CG7029-PA
           protein.
          Length = 1744

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
 Frame = +2

Query: 2   HEGPKNNRRNNYSDEPNEHYNN-----GPRKNNAEYYGQQN---MGPGRPYCAGMDQNGM 157
           H+G  N      +  P   YN+     G R +  +   QQ    +G G   C G    G+
Sbjct: 451 HKGNNNFVLGKMAATPESDYNSNATTPGGRSSEQQLQQQQQQQQLGVGGMLCGGGGGGGV 510

Query: 158 GMSQANGSGGYN 193
           GM +    GG N
Sbjct: 511 GMRETTNGGGNN 522


>AJ009736-1|CAA08806.1|  347|Drosophila melanogaster Gag protein
           protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 14  KNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQN 109
           K   R NY+   N+ Y N    N + YY   N
Sbjct: 211 KRRNRGNYNQNNNQKYYNNRNHNYSNYYPSMN 242


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,499,374
Number of Sequences: 53049
Number of extensions: 582226
Number of successful extensions: 2323
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2277
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2338128087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -