Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L03
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 35 0.037
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z93377-8|CAE17791.1| 318|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z32679-3|CAA83596.1| 401|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF003151-2|AAK18919.3| 277|Caenorhabditis elegans Prion-like-(q... 30 1.4
Z99281-7|CAC42379.1| 77|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81030-11|CAE17704.1| 100|Caenorhabditis elegans Hypothetical p... 29 3.2
Z74031-5|CAA98457.1| 225|Caenorhabditis elegans Hypothetical pr... 27 7.4
U27312-6|AAA68250.1| 512|Caenorhabditis elegans Hypothetical pr... 27 7.4
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 35.1 bits (77), Expect = 0.037
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Frame = +2
Query: 8 GPKNNRRNNYSDEPNEHY--NNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGS 181
G N NN + N +Y NN N G N G G AG NG G S N
Sbjct: 204 GNSGNSSNNNNSSGNSNYGSNNSGSGNGNSNSGNGNSGNGNGNNAGNSGNGNGNSNGNNG 263
Query: 182 GGYN 193
G N
Sbjct: 264 NGSN 267
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +2
Query: 23 RRNNYSDEPNEHYNNGPRKNNAEYYGQQN-MGPGRPYCAGMDQNGMGMSQAN-----GSG 184
R ++ +D N+ +NNG + NN + + N M G D NG G +Q N SG
Sbjct: 148 RGSSRNDGENDDWNNGDQNNNNNFNSKNNRMNKYGNRNDGDDYNGNGNNQDNWNSGSNSG 207
Query: 185 GYN 193
GYN
Sbjct: 208 GYN 210
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = +2
Query: 8 GPKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPG---RPYCAGMDQNGMGMSQANG 178
G NNR + + + + NN NN G N G G G D N S G
Sbjct: 424 GSNNNRNDGWGSSSSNNNNNNNNNNNGGTGGYSNNGGGWGSNNNNNGNDGNNW-ESNNGG 482
Query: 179 SGGYNDRQRN 208
+GG D N
Sbjct: 483 NGGGGDNWNN 492
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 14 KNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANG---SG 184
KNNR N Y + + NG N + N G Y G +G G + NG +
Sbjct: 174 KNNRMNKYGNRNDGDDYNGNGNNQDNWNSGSNSG---GYNGGGGGSGGGSNWNNGDNEND 230
Query: 185 GYNDRQRNHR 214
G+N+ N +
Sbjct: 231 GWNNNNNNRK 240
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +2
Query: 17 NNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGGYND 196
NN NN N + N G + G G G + + + G S +GS G ND
Sbjct: 233 NNNNNNRKSNNNNNNNYGNSWGTNDNDGNSWKGSGN---SNGNSDNWGGSSGSGSNGGND 289
Query: 197 RQRNH 211
N+
Sbjct: 290 GDSNY 294
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +2
Query: 23 RRNNYSDEPNEHYNNGPRKNNAEYYGQQN-MGPGRPYCAGMDQNGMGMSQAN-----GSG 184
R ++ +D N+ +NNG + NN + + N M G D NG G +Q N SG
Sbjct: 148 RGSSRNDGENDDWNNGDQNNNNNFNSKNNRMNKYGNRNDGDDYNGNGNNQDNWNSGSNSG 207
Query: 185 GYN 193
GYN
Sbjct: 208 GYN 210
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = +2
Query: 8 GPKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPG---RPYCAGMDQNGMGMSQANG 178
G NNR + + + + NN NN G N G G G D N S G
Sbjct: 424 GSNNNRNDGWGSSSSNNNNNNNNNNNGGTGGYSNNGGGWGSNNNNNGNDGNNW-ESNNGG 482
Query: 179 SGGYNDRQRN 208
+GG D N
Sbjct: 483 NGGGGDNWNN 492
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 14 KNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANG---SG 184
KNNR N Y + + NG N + N G Y G +G G + NG +
Sbjct: 174 KNNRMNKYGNRNDGDDYNGNGNNQDNWNSGSNSG---GYNGGGGGSGGGSNWNNGDNEND 230
Query: 185 GYNDRQRNHR 214
G+N+ N +
Sbjct: 231 GWNNNNNNRK 240
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +2
Query: 17 NNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGGYND 196
NN NN N + N G + G G G + + + G S +GS G ND
Sbjct: 233 NNNNNNRKSNNNNNNNYGNSWGTNDNDGNSWKGSGN---SNGNSDNWGGSSGSGSNGGND 289
Query: 197 RQRNH 211
N+
Sbjct: 290 GDSNY 294
>Z93377-8|CAE17791.1| 318|Caenorhabditis elegans Hypothetical
protein F13A7.12 protein.
Length = 318
Score = 30.7 bits (66), Expect = 0.80
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +2
Query: 29 NNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGGYNDRQRN 208
N Y +P+ YN + Y + G Y D+N MGMS G GY D+
Sbjct: 150 NFYGADPSSEYNK-------DLYEKDLKGKYYQYAVS-DRNSMGMSAVLGDNGYKDQVTQ 201
Query: 209 H 211
H
Sbjct: 202 H 202
>Z32679-3|CAA83596.1| 401|Caenorhabditis elegans Hypothetical
protein C05B5.3 protein.
Length = 401
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 8 GPKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQ-NMGPGRPYCAGMDQNGMGMSQANGSG 184
GP + N + N + N + N + +G N PY +G NG +Q G
Sbjct: 202 GPTSGFSNQQTSNQNSGFFNNQNQQNGQNFGNSGNQNGVNPY-SGAFSNGQNQNQQGFFG 260
Query: 185 GYNDRQRN 208
+ Q+N
Sbjct: 261 NNQNNQQN 268
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 50 NEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANG-SGGYNDRQRNHR 214
N++ N+ N + QN+G + +Q +Q NG + G++++Q +++
Sbjct: 160 NQNQNSNQNLNQNNFQQNQNLGASSGFFNNQNQQNSQQNQVNGPTSGFSNQQTSNQ 215
>AF003151-2|AAK18919.3| 277|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 24
protein.
Length = 277
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Frame = +2
Query: 35 YSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAG----MDQNGMGMSQANGSGGYNDRQ 202
YSD P + N G N G N G + G + N G S NG G ND
Sbjct: 103 YSDNPKQIQNGGGNSGNWNSGGNNNGASGGSWGNGNANNNNNNNNGGSNNNGWGNNNDWS 162
Query: 203 RNH 211
N+
Sbjct: 163 SNY 165
>Z99281-7|CAC42379.1| 77|Caenorhabditis elegans Hypothetical
protein Y57G11C.9c protein.
Length = 77
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +2
Query: 2 HEGPKNNRRNNYSDEPN---EHYNNGPRKNNAE 91
H G R NNY++ N HYNN PR N +
Sbjct: 12 HRGGGGFRHNNYNNNNNNHHHHYNNLPRINETQ 44
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +2
Query: 2 HEGPKNNRRNNYSDEPN---EHYNNGPRKNNAE 91
H G R NNY++ N HYNN PR N +
Sbjct: 12 HRGGGGFRHNNYNNNNNNHHHHYNNLPRINETQ 44
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +2
Query: 2 HEGPKNNRRNNYSDEPN---EHYNNGPRKNNAE 91
H G R NNY++ N HYNN PR N +
Sbjct: 12 HRGGGGFRHNNYNNNNNNHHHHYNNLPRINETQ 44
>Z81030-11|CAE17704.1| 100|Caenorhabditis elegans Hypothetical
protein C01G10.15 protein.
Length = 100
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/63 (26%), Positives = 21/63 (33%)
Frame = +2
Query: 2 HEGPKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGS 181
+ G NN N Y+ NN N YY N G + NG + S
Sbjct: 28 NNGYNNNNNNGYTTYYYYPNNNNNNNNGQTYYYYDNNGYNNGCSGCSNNNGYTYYYPSNS 87
Query: 182 GGY 190
GY
Sbjct: 88 NGY 90
>Z74031-5|CAA98457.1| 225|Caenorhabditis elegans Hypothetical
protein F32D8.5a protein.
Length = 225
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -3
Query: 244 RCVHSLG----CSQSVIPLAVIVPPGAVRLRHTHSVLVHAGTVRP 122
+CV SLG C+ V+PL+ I HS+L+H GT+ P
Sbjct: 20 KCVRSLGTTSKCNVEVLPLSKIDKDDL-----GHSILIHKGTLPP 59
>U27312-6|AAA68250.1| 512|Caenorhabditis elegans Hypothetical
protein F26A1.3 protein.
Length = 512
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 14 KNNRRNNYSDEPNEHYNNGPRKNNAE 91
K N RNNYS + + + P K+N++
Sbjct: 6 KKNARNNYSSQQSSNSGPSPTKDNSD 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,155,920
Number of Sequences: 27780
Number of extensions: 291310
Number of successful extensions: 819
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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