Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L02
(318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 34 0.006
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 32 0.024
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 31 0.032
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 31 0.042
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 0.17
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 28 0.30
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 26 1.6
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 1.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 2.8
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 24 4.8
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 24 4.8
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 24 4.8
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 24 6.4
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 24 6.4
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 24 6.4
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 33.9 bits (74), Expect = 0.006
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 13 ITHMQDLQEVTQEVHYENYRSERLAR-SGQAPKRHTSTESGLSEADSNGVTNGSNEDST 186
I+H+ L+ +T++ +YENYR+E+L+ S ++ + + NGS T
Sbjct: 265 ISHLDILKSITKQTYYENYRTEKLSNDSPSNTSLSLQKQNSIVANEDKRSVNGSERTET 323
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 31.9 bits (69), Expect = 0.024
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 16 THMQDLQEVTQEVHYENYRSERLARS 93
TH++DL +T YE YR+E+L+ S
Sbjct: 301 THIEDLHNITSNQLYETYRTEKLSTS 326
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 31.5 bits (68), Expect = 0.032
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 16 THMQDLQEVTQEVHYENYRSERLARSG 96
TH+++L+E T ++ YE YR+ERL SG
Sbjct: 344 THLEELKEQTNKL-YEAYRTERLLSSG 369
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 31.1 bits (67), Expect = 0.042
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 16 THMQDLQEVTQEVHYENYRSERLA 87
TH+QDL E T HYE +R ++L+
Sbjct: 277 THLQDLIETTSYYHYEKFRFKQLS 300
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.17
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 22 MQDLQEVTQEVHYENYRSERL-ARSGQAPKRHTSTESGLSEADSN 153
M DL + T+E YE YR E++ R PK T + E + N
Sbjct: 276 MLDLIQTTEEKLYEQYRQEQMKVRQYGEPKLRTIDNAKFKEEEEN 320
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 28.3 bits (60), Expect = 0.30
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 28 DLQEVTQEVHYENYRSERLARSGQAPKRHTSTES 129
D+Q T VH+E RSE + R+G A T S
Sbjct: 35 DVQSPTTGVHHERNRSEDILRTGGATSETTKDAS 68
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 1.6
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +1
Query: 19 HMQDLQEVTQEVHYENYRSERLA--RSG--QAPKRHTSTESGLSEADSNGVTNGSNEDST 186
HM +L T+ YE YR E+L +SG + K H + A +T +NE +
Sbjct: 274 HMLELINTTETNIYERYRREQLTNRKSGIPKLKKEHYERLNNEKRAIQQKITQMTNETES 333
Query: 187 ----ERERVLREKEA 219
+ E+++ ++A
Sbjct: 334 FFQAKEEKMIETRDA 348
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 1.6
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 31 LQEVTQEVHYENYRSERLARS 93
+Q++T+E+ Y+NYR L R+
Sbjct: 949 IQKLTEEISYKNYRCPFLCRN 969
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 2.8
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = +1
Query: 25 QDLQEVTQEVHYENYRSERLARSGQAPKRHTSTESGLSEADSNGVTNGSNEDSTERE 195
++ +EV ++ + S + ++ +S+ESG S++ S+ + S+ED +R+
Sbjct: 185 EEEEEVVEKTEEKKEGSSESSSDSESSS-DSSSESGDSDSSSDSESESSSEDEKKRK 240
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 4.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 148 NPLHLDHSQ*KYDVLEPDRYVLVSPNDS 65
NPLH++ ++ D+L+ + L SP+ +
Sbjct: 206 NPLHVESARAGLDLLDQSDFSLTSPSSA 233
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 24.2 bits (50), Expect = 4.8
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 10 LITHMQDLQEVTQEVHYENYRSERLARSGQAPKRHTSTESGLSEADSNGVTNGSNEDSTE 189
L+ D Q++ +V Y + + L Q +R S GLS DSNG + +N T+
Sbjct: 255 LLGRALDSQKMFHDVTYSHRLRDSLKEVYQY-RRIISPPPGLSSMDSNGSSIENNFLYTK 313
Query: 190 R 192
R
Sbjct: 314 R 314
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 24.2 bits (50), Expect = 4.8
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 22 MQDLQEVTQEVHYE--NYRSERLARSGQAPKRHTSTESGLSEADSNGVTNGSNEDSTERE 195
+QDLQE QEV+ E + +E+L S + T L + D+ D+T+R+
Sbjct: 356 VQDLQEKMQEVNAEKLQHENEKLESSHELGSIRTLKAQKLIDLDNIKRELSYYNDATKRK 415
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 106 KRHTSTESGLSEADSNGVTNGSNEDSTERE 195
KR + SG S +D+NG NG D ++++
Sbjct: 88 KRSQNGSSG-SNSDANGRKNGQKNDDSKKK 116
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 173 MKIRLNANACFVRRKQNYVAC 235
MK RLNAN F R+ +V C
Sbjct: 1 MKFRLNANFNFSFRRYCFVQC 21
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 23.8 bits (49), Expect = 6.4
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +1
Query: 1 ARGLITHMQDLQEVTQEVHYENYRSERLARSGQAPKRHTSTESGLSEADSNGVTNGSNED 180
A+GL ++ +++ + + + R A + P+R T T L N N NE+
Sbjct: 54 AQGLFQRRRNARKIDHPLGW--FLKNRHA-AAHIPQRTTKTSQKLVLLPENHAVNSFNEE 110
Query: 181 STERERVLREKEA 219
+ E +L +A
Sbjct: 111 ESNYEDLLTPSDA 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.122 0.328
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 917,636
Number of Sequences: 5004
Number of extensions: 12734
Number of successful extensions: 45
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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