Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L02
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0054 + 16883678-16883719,16884667-16884723,16884852-168849... 29 0.60
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 29 0.79
06_02_0097 + 11710560-11710859,11712605-11713270 27 3.2
07_03_0037 + 12709014-12709104,12709407-12709612,12710033-127100... 27 4.2
03_01_0071 + 580988-581134,581276-581359,581499-581573,581892-58... 27 4.2
01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797... 27 4.2
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 26 5.6
09_03_0044 - 11855569-11855664,11855775-11855891,11856572-118566... 26 5.6
08_01_0734 + 6729401-6729743,6729997-6730190,6730275-6730461,673... 26 5.6
07_03_0876 - 22215688-22215789,22216051-22216206,22217227-222172... 26 5.6
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 26 5.6
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40... 26 7.4
02_02_0239 - 8177152-8177445,8177821-8178207,8178717-8179715,817... 26 7.4
01_06_0440 + 29401405-29401407,29401721-29401920,29402406-294024... 26 7.4
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849 25 9.7
05_03_0293 - 11813846-11813965,11814073-11814408,11814516-118146... 25 9.7
>03_04_0054 +
16883678-16883719,16884667-16884723,16884852-16884959,
16885028-16885102,16885744-16885833,16885950-16886057,
16886137-16886211,16886371-16886433,16886531-16886924,
16888539-16888651,16888799-16888829,16888987-16889864
Length = 677
Score = 29.5 bits (63), Expect = 0.60
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 31 LQEVTQEVHYENYRSERLARSGQAPKRHTST--ESGLSEADSNGVTNGSNEDSTERER 198
L E ++ E +E AR+ QA K T+ SG+ A++ V +G +ED+ + +R
Sbjct: 411 LGEEAEKKELEEEAAEVKARAEQAAKEGTNAGVNSGIDTAEALQVKDGKSEDAAKNKR 468
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 29.1 bits (62), Expect = 0.79
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 94 GQAPKRHTSTESGLSEADSNGVTNGSNEDSTE 189
G APK + G+ AD +GVT+ + ST+
Sbjct: 690 GSAPKNDNKSRHGIQAADVSGVTSAKDPTSTK 721
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 27.1 bits (57), Expect = 3.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 215 KQNYVACNRCWSRCSDRC 268
+ +VAC CWS+ S++C
Sbjct: 102 QNGHVACFSCWSKLSNKC 119
>07_03_0037 +
12709014-12709104,12709407-12709612,12710033-12710097,
12710143-12710404,12711332-12711448,12711779-12712056,
12712304-12712406
Length = 373
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -1
Query: 132 TTLSRSMTFWSLTATC*SLRTIVLIMHLLSYLLQILH 22
+TL + +++W+ ++ S R ++MH +LL +LH
Sbjct: 159 STLCKLVSWWNSSSAGLSSRDSAILMHQSDWLLWLLH 195
>03_01_0071 +
580988-581134,581276-581359,581499-581573,581892-581973,
582078-582223,582337-582408,582765-582837,582933-582998,
583089-583123,583316-583387,583494-583622,583706-583813,
584062-584118,584323-584439,584530-584612,585345-585411,
585705-585776,585874-585924,586704-586763,586867-587016,
587107-587322
Length = 653
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 97 QAPKRHTSTESGLSEADSNGVTNGSNEDSTE 189
Q+P+ + ESG EA+++G N NE S +
Sbjct: 619 QSPEEVSGPESGQCEAEADGEDNMKNEASKD 649
>01_07_0312 +
42677752-42678561,42678701-42678910,42679597-42679704,
42679915-42680010,42680090-42680182,42680276-42680386,
42680482-42680514,42680592-42680642,42680960-42681037,
42681145-42681165
Length = 536
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 25 QDLQEVTQEVHYENYRSERLARSGQAPKRHTSTESGLSEADSNGVT 162
Q Q++ ++ EN+R + + SG+ P G + S GVT
Sbjct: 25 QTTQKLREKAATENHRPKEIGPSGEKPPHKLLRAKGKAGTSSIGVT 70
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 109 RHTSTESGLSEADSNGVTNGSNEDSTERERVLREKE 216
RH+S+ GL + T GS E ER+ RE E
Sbjct: 22 RHSSSLQGLRALSTLSTTLGSGAGEDEIERIRREFE 57
>09_03_0044 -
11855569-11855664,11855775-11855891,11856572-11856682,
11856768-11856874,11857182-11857221,11857328-11857408,
11857578-11857631,11857800-11857860,11857984-11858029,
11858276-11858352,11858448-11858563,11858654-11858890
Length = 380
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 230 ACNRCWSRCSDRCSFKLRGPQILLHSLCM 316
AC CW S +C +G LHS+ +
Sbjct: 190 ACAYCWDVESGKCKMTFKGHTDYLHSIAV 218
>08_01_0734 +
6729401-6729743,6729997-6730190,6730275-6730461,
6730880-6731073,6731435-6731827,6731913-6731978,
6732061-6732429,6732517-6732568,6733393-6733397
Length = 600
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 55 HYENYRSERLARSGQAPKRHTSTESGLSEADSNGVTNGSNEDSTERERV 201
H E + +R+ +G P RH S LS + G + ++ + E V
Sbjct: 172 HQETRKRKRVDCAGSEPARHESGLPNLSRSTRRGTGSSTSTHDEDEELV 220
>07_03_0876 -
22215688-22215789,22216051-22216206,22217227-22217247,
22217311-22217580,22217793-22219178,22220562-22220621
Length = 664
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 257 SDRCSFKLRGPQILL 301
SDRC KL PQIL+
Sbjct: 22 SDRCQLKLENPQILM 36
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 139 HLDHSQ*KYDVLEPDRYVLVSPNDSSH 59
H DH+ K D+ +PD Y SP +++H
Sbjct: 1935 HDDHNSEKEDIHQPDGYA-ASPGNNNH 1960
>06_01_0041 +
403634-403817,404154-404332,404431-404536,404620-404936,
405231-405605,406199-406283,406570-408066,408575-408738
Length = 968
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +1
Query: 97 QAPKRHTSTESGLSEADSNGVTNGSNEDSTERERVLREKEA 219
Q P T+T + + D + +++ ED+T+ VL A
Sbjct: 193 QTPSERTATTAKSEKPDGSAISSAYQEDTTKTSSVLSASTA 233
>02_02_0239 -
8177152-8177445,8177821-8178207,8178717-8179715,
8179799-8179953,8180725-8180812,8180901-8181004,
8181327-8181549,8182251-8182335,8182425-8182816,
8182852-8183097
Length = 990
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 16 THMQDLQEVTQEVHYENYRSERLARSGQAPKRHTSTESGLSEADSNGVT 162
+HM +L + +EV + R +L R A + TES + E VT
Sbjct: 125 SHMLNLANLAEEVQIAHRRRIKLKRGDFADEASAPTESDIEETLKRLVT 173
>01_06_0440 +
29401405-29401407,29401721-29401920,29402406-29402490,
29403038-29403121,29403853-29404147,29404228-29404322,
29406118-29406858
Length = 500
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 91 SGQAPKRHTSTESGLSEADSNGVTNGSNEDSTERERVLREKE 216
+G +P + + + AD+ ++ +NE TE ER+ + E
Sbjct: 166 AGTSPALEAAAAAAMKVADAEAKSHLANEHMTEAERIFKLAE 207
>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
Length = 489
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 206 VRRKQNYVACNRCWSRCSDRCSF--KLRG 286
V +K NY+ C+RC RC + + LRG
Sbjct: 327 VVQKSNYLWCDRCKVRCDNNVTMADHLRG 355
>05_03_0293 -
11813846-11813965,11814073-11814408,11814516-11814617,
11814729-11814912,11815012-11815196,11815949-11816095,
11816310-11816426
Length = 396
Score = 25.4 bits (53), Expect = 9.7
Identities = 7/27 (25%), Positives = 18/27 (66%)
Frame = -3
Query: 136 LDHSQ*KYDVLEPDRYVLVSPNDSSHN 56
++H+Q +D+L+ RY ++ ++ H+
Sbjct: 261 INHNQKSFDILDSKRYDMIGGTETQHH 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.122 0.328
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,852,023
Number of Sequences: 37544
Number of extensions: 81158
Number of successful extensions: 185
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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