Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L02
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.51 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   8.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 0.51
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 88   RSGQAPKRHTSTESGLSEADSNGVTNGSNEDSTERERVLREKE 216
            R+     R TS  + LS + +      S  DST+ +R  RE+E
Sbjct: 1386 RNDDGSDRLTSPPTPLSISRAGSRDEDSTRDSTKLDRSSRERE 1428


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 97  QAPKRHTSTESGLSEADSNGVTNGS 171
           +A   HTST + LSEA     T GS
Sbjct: 283 EAESEHTSTPNFLSEAKIFPPTPGS 307



 Score = 20.6 bits (41), Expect = 4.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 100 APKRHTSTESGLSEADSNGVTNGSNEDSTERE 195
           A     S++SG + +D    +  SNE   E E
Sbjct: 256 AGNNEDSSDSGAAASDRPPASASSNEHEAESE 287


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 100 APKRHTSTESGLSEADSNGVTNGSNEDSTERERVLREKEA 219
           +P   + T +GLS    + +  G N    +R +V R ++A
Sbjct: 334 SPSNPSITRTGLSSVRDSSIICGGN----KRSQVFRGRDA 369


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 79  RLARSGQAPKRHTSTESGLSEADSNGVTNGSN 174
           R + +GQ P    +T + +S   S  +  G+N
Sbjct: 722 RTSTAGQFPTNVATTVTSMSIDQSTVIQTGAN 753


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 70  RSERLARSGQAPKRHTSTESGL 135
           R+    RSGQ   +  STE G+
Sbjct: 527 RALEAIRSGQTSVQRASTEFGI 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.122    0.328 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,549
Number of Sequences: 438
Number of extensions: 822
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.0 bits)