Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L01
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   1.7  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   4.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.3  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   5.3  

>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 418 LLHFVESLLRDYEGVVHGLIEDPLVVMSHMLLLRTCY 308
           LL F+E +  DYE  +H L      + +H+ L    Y
Sbjct: 400 LLKFIEEIRNDYEERIHALESQNSALKAHLRLAVDAY 436


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 5   EDGLQMNFMYSTPTCYL--KAVRDADPVLPTKQDDFF 109
           EDG+  + ++++   +L  K  R ADPV+ +  DD F
Sbjct: 20  EDGVYTSSLHNSNNPFLAPKTERVADPVMESMADDLF 56


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 119  SDPTAYWTGYFTSRPTTKYFEREANNYLQVVKQLQVLAGLEKHNVY 256
            S P    T + T+      FE+EAN +   +  L  +  ++K N+Y
Sbjct: 1737 SSPPPIHTNFDTNADIITLFEKEANEHPSSI-ALHFVYNVDKENIY 1781


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 236 LEKHNVYVLNELRDAMGVMQHHDAITGTEKQHVTHDYE 349
           ++K   Y+L+ L   +  ++ HD +  T K+ +T DYE
Sbjct: 552 IQKKEYYLLSVL---LATVRDHDGVLQTWKKLITGDYE 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,070
Number of Sequences: 5004
Number of extensions: 41790
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)