Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L01
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 116 1e-26
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 116 2e-26
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 62 3e-10
02_05_0015 - 24992253-24993993,24995331-24995695 29 3.1
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901... 27 7.1
05_04_0293 - 19898254-19898819,19899698-19899701 27 7.1
02_02_0206 - 7771835-7771913,7772083-7772219,7772364-7772422,777... 27 7.1
08_01_0044 + 301981-302826,302972-303580 27 9.4
06_02_0051 - 10957857-10958127,10959791-10960035,10960160-109602... 27 9.4
04_01_0360 - 4720997-4721812 27 9.4
02_05_0273 + 27365896-27366025,27366231-27366307,27366416-273664... 27 9.4
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 116 bits (279), Expect = 1e-26
Identities = 54/120 (45%), Positives = 76/120 (63%)
Frame = +2
Query: 2 HEDGLQMNFMYSTPTCYLKAVRDADPVLPTKQDDFFPYASDPTAYWTGYFTSRPTTKYFE 181
++DG ++N +YSTP+ Y A + P K +DFFPYA +P AYWTGYFTSRP K +
Sbjct: 317 NKDG-RVNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYV 375
Query: 182 REANNYLQVVKQLQVLAGLEKHNVYVLNELRDAMGVMQHHDAITGTEKQHVTHDYERILN 361
R + Y +QL+ G ++ + L DA+ + QHHDA+TGTEKQHV +DY + L+
Sbjct: 376 RVMSGYYLAARQLEFFKGRSNSDL-TTDSLADALALAQHHDAVTGTEKQHVANDYAKRLS 434
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 116 bits (278), Expect = 2e-26
Identities = 64/182 (35%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Frame = +2
Query: 2 HEDGLQMNFMYSTPTCYLKAVRDADPVLPTKQDDFFPYASDPTAYWTGYFTSRPTTKYFE 181
++DG +++ +YSTP+ Y A ++ P K DD+FPYA AYWTGYFTSRPT K +
Sbjct: 324 NKDG-RVHALYSTPSIYTDAKHASNESWPLKYDDYFPYADAKNAYWTGYFTSRPTFKRYI 382
Query: 182 REANNYLQVVKQLQVLAGLEKHNVYVLNELRDAMGVMQHHDAITGTEKQHVTHDYERIL- 358
R + Y +QL+ L G ++ + L D +G+ QHHDA++GT KQH T DY + L
Sbjct: 383 RMISGYYLAARQLEFLVGRSSLGLFT-SSLEDPLGIAQHHDAVSGTAKQHTTDDYSKRLA 441
Query: 359 ------NQAVDDALIISQQAFNKMKQGKSSKQPLFNYDRCHFNESSCLTAETSDNFIVTI 520
+ V+ AL + K S+ L N C E +A+ + ++ +
Sbjct: 442 IGVSQVEKGVNTALSCLTSSKGTCTATKFSQCQLLNISYCPSTEEGISSAK---SLVIVV 498
Query: 521 YN 526
YN
Sbjct: 499 YN 500
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 62.1 bits (144), Expect = 3e-10
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Frame = +2
Query: 77 PVLPTKQDDFFPYASDPTAYWTGYFTSRPTTKYFEREANNYLQVVKQLQ--VLAGLEKHN 250
P PT DFF YA YW+GY+ SRP K +R L+ + L VL +K
Sbjct: 482 PGFPTLSGDFFTYADRNQDYWSGYYVSRPYFKAVDRVLEQTLRASEILSSFVLGYCQKLQ 541
Query: 251 V--------YVLNELRDAMGVMQHHDAITGTEKQHVTHDYERILNQAVDDALIISQQA 400
+ L R + + QHHD +TGT K HV DY ++ ++ D + +A
Sbjct: 542 CVKLPISFSHKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQLFMSRA 599
>02_05_0015 - 24992253-24993993,24995331-24995695
Length = 701
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 50 YLKAVRDADPVLPTKQDDFFPYASDPTAYWTG--YFTSRPTTKYFEREANN 196
+ K V + DP+L KQD YA + W G R TK ERE N+
Sbjct: 320 HAKKVNEMDPLLKPKQD---RYALRTSPQWLGPQIEVIRAATKSIEREVNS 367
>11_06_0723 -
26688378-26688385,26689351-26689569,26690100-26690106,
26690194-26690256,26690329-26690400,26690507-26691681,
26692024-26692626,26692643-26692781
Length = 761
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 170 KYFEREANNYLQVVKQLQVLAGLEKHNVY 256
++ E+E NYLQ V++L++ AG + H VY
Sbjct: 186 QFGEKECRNYLQDVRKLKLGAG-DAHAVY 213
>05_04_0293 - 19898254-19898819,19899698-19899701
Length = 189
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 185 EANNYLQVVKQLQVLAGLEKHNVYVLNELRDAMGVMQHH 301
EANNY+ + KQ+ L G H + R + ++ H
Sbjct: 21 EANNYIVITKQIYKLTGQTHHLALIQAARRSSFKLLTAH 59
>02_02_0206 -
7771835-7771913,7772083-7772219,7772364-7772422,
7772535-7772610,7772717-7772873,7773241-7773329,
7773648-7773750,7773919-7774013,7774301-7774367,
7774894-7775066
Length = 344
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/73 (20%), Positives = 31/73 (42%)
Frame = +2
Query: 257 VLNELRDAMGVMQHHDAITGTEKQHVTHDYERILNQAVDDALIISQQAFNKMKQGKSSKQ 436
++ E+ VM +D + KQ + + + +DD L + + + +G S Q
Sbjct: 9 IVREMNGGFEVMSGYDRSSMAPKQQQREEESKWYEEEIDDDLKLCYALNSVLHRGASKYQ 68
Query: 437 PLFNYDRCHFNES 475
+ D HF ++
Sbjct: 69 EIALIDTKHFGKA 81
>08_01_0044 + 301981-302826,302972-303580
Length = 484
Score = 27.1 bits (57), Expect = 9.4
Identities = 24/90 (26%), Positives = 37/90 (41%)
Frame = +2
Query: 8 DGLQMNFMYSTPTCYLKAVRDADPVLPTKQDDFFPYASDPTAYWTGYFTSRPTTKYFERE 187
DGL + + S PT + + R A+ VL T +AS P A T T +
Sbjct: 48 DGLMLVHLGSVPTLVVSSPRAAEAVLRTHD---LAFASRPRAMVPDIITYGATDSCYGPY 104
Query: 188 ANNYLQVVKQLQVLAGLEKHNVYVLNELRD 277
+++ +V K + V L H V R+
Sbjct: 105 GDHFRKVRKAVTVHL-LNSHKVQAYRPARE 133
>06_02_0051 -
10957857-10958127,10959791-10960035,10960160-10960229,
10960319-10960986
Length = 417
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 154 REISGPVRSRVARVREEIVLF 92
REISG +RSR RV+ + V+F
Sbjct: 96 REISGTIRSRHGRVQTKAVVF 116
>04_01_0360 - 4720997-4721812
Length = 271
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 289 DATPRRYNRYGEAACDS*LREDPQSGRGRRPHNLATGFQQNEAREI 426
D RR R GEA ++ R D RGRR + ++ E++ +
Sbjct: 168 DGGRRRRQRDGEAGVEAAARGDGDGLRGRRRRQCSVAARERESKRL 213
>02_05_0273 +
27365896-27366025,27366231-27366307,27366416-27366452,
27366761-27366848,27366986-27367256,27368283-27368372,
27368646-27368714
Length = 253
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 466 KVTPVIIKQWLFARFPLLHFVESLLRDYEGVVHGLIEDPLVVMSHM 329
K TP +I Q + R + V+S L+ Y G HG+ ++ + H+
Sbjct: 44 KATPKLILQLMDVRGLTISHVKSHLQMYRGTRHGIGQNDMQPQLHL 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,211,767
Number of Sequences: 37544
Number of extensions: 256146
Number of successful extensions: 702
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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