Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K23
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 130 LFSLLLNVQSLCPTFLEN*FIKSKSLNLILST 35
           L+S+ L +++ CP  L N  +  +S  LIL +
Sbjct: 151 LYSMRLTIKAKCPMELRNFPMDRQSCPLILGS 182


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 352 MGTHWGGKEEVQTCTLGDLKDNHL 281
           MG+H G +  V+TC   +L+D  L
Sbjct: 380 MGSHHGQRVMVRTCNGLELRDPSL 403


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 229  KKGTAWEGGLYKLRMIFKDDYPSSPPKCKFEPPLF 333
            K G +   G  + R +FKD  P++    +  PP +
Sbjct: 1238 KTGVSTLRGQERQRSLFKDSSPATALMLQHAPPAY 1272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,898
Number of Sequences: 438
Number of extensions: 3396
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)