Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_K22
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0223 + 6548810-6549025,6549159-6549211,6549457-6549492,654... 34 0.11
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 31 0.56
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165 31 0.98
05_04_0069 - 17639386-17641380 29 2.3
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300... 29 4.0
11_04_0215 + 14944039-14944227,14944444-14944905,14945513-14945713 28 5.2
04_04_1114 + 30995816-30996229,30997054-30997129,30997493-309975... 28 5.2
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897... 28 6.9
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 27 9.2
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 27 9.2
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 27 9.2
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 27 9.2
02_02_0438 + 10261084-10262061,10265049-10265690 27 9.2
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 27 9.2
01_01_0914 - 7208910-7209449,7209488-7209919 27 9.2
>03_02_0223 +
6548810-6549025,6549159-6549211,6549457-6549492,
6549786-6549933,6550078-6550185,6550757-6550824,
6551846-6551969,6552067-6552213,6552545-6552805,
6552885-6553169,6553796-6553939,6554565-6554915,
6555405-6555470,6555598-6555768
Length = 725
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 237 LSKAMESGSENPQLLSSLGVLGGCNLKDLP-AERNVYDNYEQ 359
L K +E+ ++NP LL+SLG L +++ P A RN+ + EQ
Sbjct: 13 LKKVLETRTDNPDLLASLGALSTFYVQNTPQARRNLKSSVEQ 54
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 31.5 bits (68), Expect = 0.56
Identities = 22/57 (38%), Positives = 26/57 (45%)
Frame = +3
Query: 258 GSENPQLLSSLGVLGGCNLKDLPAERNVYDNYEQCLSYQSFLNYEHEIETDQEDSET 428
GS NP L S + V L + A + Y C SY SFL EH+ Q SET
Sbjct: 1854 GSSNPFLKSKVIVQRLSKLMEPFAFPSDYSRTSSC-SYSSFLEVEHQCGRRQRQSET 1909
>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
Length = 648
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 441 NEDDDLSPENLVQKNIKHFCNLMKFAHGRNPPAFPSTVHEKRVDA 575
N D L E Q+ + HF +L+K HGR+ +H R DA
Sbjct: 256 NGDGYLGGEGFDQRVVNHFVDLIKRKHGRDITGDGRAMHRLRRDA 300
>05_04_0069 - 17639386-17641380
Length = 664
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 162 PWSNVTCKSNHKSGFE-HFLLRRGLHLSKAMESGSENPQLLSSLGVLGGCNLKDLPAERN 338
P+ NV + G+ H + L ++M+S E P L++ VLG C+ E
Sbjct: 354 PYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGR 413
Query: 339 VYDNYEQ 359
Y N Q
Sbjct: 414 SYFNEMQ 420
>05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,
3003571-3004442,3004592-3004773,3005206-3005295,
3005388-3005675,3005776-3005997,3006053-3006133,
3006634-3006861
Length = 1475
Score = 28.7 bits (61), Expect = 4.0
Identities = 29/103 (28%), Positives = 45/103 (43%)
Frame = +3
Query: 183 KSNHKSGFEHFLLRRGLHLSKAMESGSENPQLLSSLGVLGGCNLKDLPAERNVYDNYEQC 362
K H + R L L K MES EN + + L A+R V +N +
Sbjct: 1078 KEIHLEKLQSVYDERYLSLGKMMES-RENMLKSCNTEIQKMQQLAYEQAQRTVDENQKLR 1136
Query: 363 LSYQSFLNYEHEIETDQEDSETSMLRNEDDDLSPENLVQKNIK 491
L+ QS + HE++ + + E + + D + E L+QKN K
Sbjct: 1137 LNLQSMM---HELDANCKRLEELTAQADSDKRNLEVLMQKNAK 1176
>11_04_0215 + 14944039-14944227,14944444-14944905,14945513-14945713
Length = 283
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 336 NVYDNYEQCLSYQSFLNYEHEIETDQEDSETSMLRNEDDDLSPENLVQKNIKHF 497
++Y+NYE L+Y S E + E E ++NE + P+N V + HF
Sbjct: 191 DLYENYENTLNYSS----EKKAHPKNEPFEEIEIKNEGHAM-PKNTVATSTVHF 239
>04_04_1114 +
30995816-30996229,30997054-30997129,30997493-30997587,
30997729-30997812,30998094-30998181,30998485-30998609,
30998687-30998785,31000089-31000190,31001570-31001680
Length = 397
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 453 DLSPENLVQKNIKHFCNLMKFAHGRNPPAF 542
DL+P ++++++KHF ++ K A + P+F
Sbjct: 179 DLTPSYIIEEDVKHFHSVQKQACDKFDPSF 208
>07_03_0333 -
16888606-16888740,16889463-16889570,16889691-16889790,
16890473-16890560,16890637-16893253
Length = 1015
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 559 RNVWTRTAYSGCPVPTSLAY 618
R VW R A G P PT+ AY
Sbjct: 135 RRVWARMAREGAPPPTNQAY 154
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 306 CNLKDLPAERNVYDNYEQCLSYQSFLNYEHEIETDQEDSETSMLRNEDDDLSPEN 470
C +K AE+ D+ + LS Q E E+E + ED + +ED+++ ++
Sbjct: 65 CQVKSKVAEKATQDHTKHKLSEQE---PEDEVEEEDEDEYEDDVEDEDEEVEEDD 116
>11_01_0490 -
3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +3
Query: 237 LSKAMESGSENPQLLSSLGVLGGCNLKDLPAERNVYDNYEQCLS-YQSFLNYEHEIETDQ 413
L + G + P+L+ + L K + D EQ LS YQ HEI+ +
Sbjct: 681 LDPIKDMGLQEPELVELVHKLDDLEQKLCSHPLHKSDQSEQQLSWYQRKAELNHEIQMLK 740
Query: 414 EDSETSMLRNEDDDLSPENLVQKNIKH 494
S L+ D+L + V K + H
Sbjct: 741 SKMRDSQLQKFRDELRNRSRVLKMLGH 767
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 396 EIETDQEDSETSMLRNEDDDLSPE 467
+ +TDQE +ETS ++++DDD + E
Sbjct: 900 QAQTDQELAETSPIQDDDDDDTDE 923
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 384 NYEHEIETDQEDSETSMLRNEDDDLSPENLVQKNIKHFCNLMK 512
N EH+ E QE S+ L+ E+ DL+ + K FC ++
Sbjct: 56 NEEHDGE--QEPSKNKKLKAEESDLNGKATAVKEFSEFCKAIR 96
>02_02_0438 + 10261084-10262061,10265049-10265690
Length = 539
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 537 AFPSTVHEKRVDANRVLGLSCANKSSLHI 623
A P V K +D + V+G++ +SSLH+
Sbjct: 496 ALPDGVSPKSLDMSEVMGITLHRRSSLHL 524
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +3
Query: 315 KDLPAERNVYDNYEQCLSYQSFLNYEHEIETDQEDSETSMLRNEDDDLSPENLV 476
K++PA D E +S N+E +ET + + +++ D+ + V
Sbjct: 2810 KEIPASSTCMDKKESMISNNEVSNFEKALETHSDSPNLHVNQDKKDETADNQTV 2863
>01_01_0914 - 7208910-7209449,7209488-7209919
Length = 323
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 216 LLRRGLHLSKAMESGSENPQLLSSLGVLGGCNLKDL 323
+LRR L SK +++ E+P L++ G G C+L +L
Sbjct: 270 VLRRALSPSK-LQNKWESPFLVAGTGTCGACHLTEL 304
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,938
Number of Sequences: 37544
Number of extensions: 294930
Number of successful extensions: 901
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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