Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_K22
(625 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB014594-1|BAA31669.2| 595|Homo sapiens KIAA0694 protein protein. 31 3.3
U24105-1|AAB70879.1| 1224|Homo sapiens coatomer protein protein. 31 4.4
BC038447-1|AAH38447.1| 1233|Homo sapiens COPA protein protein. 31 4.4
AL513282-3|CAI12455.1| 1233|Homo sapiens coatomer protein comple... 31 4.4
AL513282-2|CAI12454.1| 1224|Homo sapiens coatomer protein comple... 31 4.4
AL445230-2|CAI15004.1| 1233|Homo sapiens coatomer protein comple... 31 4.4
AL445230-1|CAI15005.1| 1224|Homo sapiens coatomer protein comple... 31 4.4
Z84488-7|CAI23413.1| 158|Homo sapiens protein ( gene for squam... 30 7.6
M98343-1|AAA58455.1| 550|Homo sapiens amplaxin protein. 30 7.6
BX641037-1|CAE46023.1| 441|Homo sapiens hypothetical protein pr... 30 7.6
BC107570-1|AAI07571.1| 520|Homo sapiens BAZ2B protein protein. 30 7.6
BC012576-1|AAH12576.1| 643|Homo sapiens BAZ2B protein protein. 30 7.6
AB040909-1|BAA96000.2| 2142|Homo sapiens KIAA1476 protein protein. 30 7.6
>AB014594-1|BAA31669.2| 595|Homo sapiens KIAA0694 protein protein.
Length = 595
Score = 31.1 bits (67), Expect = 3.3
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = -2
Query: 405 FLFRAHNSETTDNSNTVRSYHKHFFQLVNLSNYTRLIH 292
+L++ + + T +N+ TVRS+ K +FQL L + + +++
Sbjct: 189 WLYKGNFNSTVNNTVTVRSFKKRYFQLTQLPDNSYIMN 226
>U24105-1|AAB70879.1| 1224|Homo sapiens coatomer protein protein.
Length = 1224
Score = 30.7 bits (66), Expect = 4.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 309 YTRLIHPRRITIEDFHYHSPWLLINAD--LVSIGNVQNRSCDSIYT*H 172
+T L H I FH+ PW+L +D + + N Q+R+C + T H
Sbjct: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGH 134
>BC038447-1|AAH38447.1| 1233|Homo sapiens COPA protein protein.
Length = 1233
Score = 30.7 bits (66), Expect = 4.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 309 YTRLIHPRRITIEDFHYHSPWLLINAD--LVSIGNVQNRSCDSIYT*H 172
+T L H I FH+ PW+L +D + + N Q+R+C + T H
Sbjct: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGH 134
>AL513282-3|CAI12455.1| 1233|Homo sapiens coatomer protein complex,
subunit alpha protein.
Length = 1233
Score = 30.7 bits (66), Expect = 4.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 309 YTRLIHPRRITIEDFHYHSPWLLINAD--LVSIGNVQNRSCDSIYT*H 172
+T L H I FH+ PW+L +D + + N Q+R+C + T H
Sbjct: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGH 134
>AL513282-2|CAI12454.1| 1224|Homo sapiens coatomer protein complex,
subunit alpha protein.
Length = 1224
Score = 30.7 bits (66), Expect = 4.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 309 YTRLIHPRRITIEDFHYHSPWLLINAD--LVSIGNVQNRSCDSIYT*H 172
+T L H I FH+ PW+L +D + + N Q+R+C + T H
Sbjct: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGH 134
>AL445230-2|CAI15004.1| 1233|Homo sapiens coatomer protein complex,
subunit alpha protein.
Length = 1233
Score = 30.7 bits (66), Expect = 4.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 309 YTRLIHPRRITIEDFHYHSPWLLINAD--LVSIGNVQNRSCDSIYT*H 172
+T L H I FH+ PW+L +D + + N Q+R+C + T H
Sbjct: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGH 134
>AL445230-1|CAI15005.1| 1224|Homo sapiens coatomer protein complex,
subunit alpha protein.
Length = 1224
Score = 30.7 bits (66), Expect = 4.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 309 YTRLIHPRRITIEDFHYHSPWLLINAD--LVSIGNVQNRSCDSIYT*H 172
+T L H I FH+ PW+L +D + + N Q+R+C + T H
Sbjct: 87 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGH 134
>Z84488-7|CAI23413.1| 158|Homo sapiens protein ( gene for squamous
cell ).).
Length = 158
Score = 29.9 bits (64), Expect = 7.6
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +3
Query: 258 GSENPQLLSSLGVLGGCNLKDLPAERNVYDNYEQCLSYQSFLNYEH-EIETDQEDSETSM 434
G+E P L + GVLG + + ++ + +CLS SFL + +I +QE +
Sbjct: 7 GAERPSFLRAAGVLGWILIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQ---QI 63
Query: 435 LRNEDDDLSPENLVQKNIKHF 497
L+++ + + E L ++NIK F
Sbjct: 64 LKSKATEHATE-LAKENIKCF 83
>M98343-1|AAA58455.1| 550|Homo sapiens amplaxin protein.
Length = 550
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 324 PAERNVYDNYEQCLSYQSFLNYEHEIETDQEDS 422
PAE + YD YE L Y + Y+++ D E S
Sbjct: 480 PAEDSTYDEYENDLGYTAVALYDYQAAGDDEIS 512
>BX641037-1|CAE46023.1| 441|Homo sapiens hypothetical protein
protein.
Length = 441
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 396 EIETDQEDSETSMLRNEDDDLSPENLVQKNIKHFCNLMKFAHG-RNPPAFPSTVHEKRVD 572
++E D+E+ + S+ +EDDD E+ Q H N HG +P A EK +
Sbjct: 265 DLEEDEEEEDQSIEESEDDDSDSESEAQ----HKSNNQVLLHGISDPKADGQKATEKAQE 320
Query: 573 ANRVLGLSCANKSSLH 620
L A++S H
Sbjct: 321 KRIHQPLPLASESQTH 336
>BC107570-1|AAI07571.1| 520|Homo sapiens BAZ2B protein protein.
Length = 520
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 396 EIETDQEDSETSMLRNEDDDLSPENLVQKNIKHFCNLMKFAHG-RNPPAFPSTVHEKRVD 572
++E D+E+ + S+ +EDDD E+ Q H N HG +P A EK +
Sbjct: 204 DLEEDEEEEDQSIEESEDDDSDSESEAQ----HKSNNQVLLHGISDPKADGQKATEKAQE 259
Query: 573 ANRVLGLSCANKSSLH 620
L A++S H
Sbjct: 260 KRIHQPLPLASESQTH 275
>BC012576-1|AAH12576.1| 643|Homo sapiens BAZ2B protein protein.
Length = 643
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 396 EIETDQEDSETSMLRNEDDDLSPENLVQKNIKHFCNLMKFAHG-RNPPAFPSTVHEKRVD 572
++E D+E+ + S+ +EDDD E+ Q H N HG +P A EK +
Sbjct: 71 DLEEDEEEEDQSIEESEDDDSDSESEAQ----HKSNNQVLLHGISDPKADGQKATEKAQE 126
Query: 573 ANRVLGLSCANKSSLH 620
L A++S H
Sbjct: 127 KRIHQPLPLASESQTH 142
>AB040909-1|BAA96000.2| 2142|Homo sapiens KIAA1476 protein protein.
Length = 2142
Score = 29.9 bits (64), Expect = 7.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 396 EIETDQEDSETSMLRNEDDDLSPENLVQKNIKHFCNLMKFAHG-RNPPAFPSTVHEKRVD 572
++E D+E+ + S+ +EDDD E+ Q H N HG +P A EK +
Sbjct: 275 DLEEDEEEEDQSIEESEDDDSDSESEAQ----HKSNNQVLLHGISDPKADGQKATEKAQE 330
Query: 573 ANRVLGLSCANKSSLH 620
L A++S H
Sbjct: 331 KRIHQPLPLASESQTH 346
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,298,840
Number of Sequences: 237096
Number of extensions: 1704609
Number of successful extensions: 4031
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4031
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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