Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K21
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    29   0.34 
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    26   1.8  
SPCC569.02c |||S. pombe specific UPF0321 family protein 2|Schizo...    25   3.1  
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c...    25   5.5  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.5  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.2  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    24   9.6  

>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 367 NHCNVLITSWNTXXXXIKHSCFKNKFYDINNQLMNESIVSL 245
           +H  V I  W       +  C+K  FY I + L  E+  SL
Sbjct: 315 SHSGVKICRWTKSAMRGRGFCYKYSFYGIRSHLCMEATPSL 355


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 379 FFF*NHC-NVLITSWNTXXXXIKHSCFKNKFYDINNQLMNESIV 251
           + F N C N  +T + +     ++S F   F  +NN + +ES++
Sbjct: 471 YVFVNTCHNFFLTLYQSFTEVDENSIFNGVFETLNNDVDDESVI 514


>SPCC569.02c |||S. pombe specific UPF0321 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 87  FGRTPPQAGVLTNTITQRKRIFLFDKAEFNFYNVVSLILNFLFYNRD 227
           + + PP+   L   +T +  + LFD A+  F     L+ N    N D
Sbjct: 26  YAKLPPKYAELLANLTDQHGMVLFDTADVRFEAYNYLVNNITEINTD 72


>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 150 FLFDKAEFNFYNVVSLILNFLFYNRDNFLFLYKE-TIDSFIN*LLMS*N 293
           F+ +K +    NV++ +L  +F N D  +  YKE  I +    LL+S N
Sbjct: 29  FIEEKDKLLCLNVLANLLGGIFENEDKIIPNYKEAVIAALFERLLLSSN 77


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 77  SWRENLFTDYKHPGVSPSFHKE 12
           SW  NL+ +Y HP  + +F+KE
Sbjct: 442 SW--NLYIEYGHPTQNSTFYKE 461


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 68  PSTTSALRPDTTASRCAYKHDHTKEK 145
           PSTT  L    + S    K DHT++K
Sbjct: 125 PSTTKPLSSTPSGSLLRSKFDHTRKK 150


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 173 KFSLIKQKDPFPLCDRVCKHTCLRWCPAEGLTSWRENLFT 54
           KF+  K++ P+P  D V +    R+    G+T W   LFT
Sbjct: 123 KFNSNKEQ-PYP--DDVLEQLMFRYEEPNGMTRWDSPLFT 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,487
Number of Sequences: 5004
Number of extensions: 26669
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)