Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K21
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0136 + 31933843-31934715,31934906-31935021,31935233-319354...    28   3.0  
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364...    27   6.9  
05_06_0133 + 25905455-25905545,25905650-25906202,25906310-259068...    27   6.9  
06_03_0071 - 16212450-16212782                                         26   9.1  

>03_06_0136 +
           31933843-31934715,31934906-31935021,31935233-31935408,
           31935846-31936036,31936119-31936205,31936304-31936461,
           31936555-31936765,31936856-31937005
          Length = 653

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 367 NHCNVLITSWNTXXXXIKHSCFKNKFYDINNQLMNESIVSL 245
           +H  V I  W       +  C+K+ FY I +    E+  SL
Sbjct: 298 SHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSL 338


>08_02_1353 +
           26335306-26335448,26336025-26336106,26336322-26336451,
           26336486-26336548,26336549-26336691,26336827-26336913,
           26337014-26337088
          Length = 240

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 59  TGFPSTTSALRPDTTASRCAYKHDHTKE 142
           +GF     AL+ + TA    Y+H+H K+
Sbjct: 57  SGFQGDVKALQRNLTAKELLYEHNHNKK 84


>05_06_0133 +
           25905455-25905545,25905650-25906202,25906310-25906806,
           25906905-25907043,25907182-25907253,25907344-25907415,
           25907503-25907583,25907899-25908065,25908148-25908416,
           25908512-25908638,25908752-25908820,25908928-25909120,
           25909215-25909707
          Length = 940

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 287 IKFIFKTRMFYNNYD 331
           +K++F+T  FY NYD
Sbjct: 105 LKYLFRTTFFYGNYD 119


>06_03_0071 - 16212450-16212782
          Length = 110

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 119 KH-TCLRWCPAEGLTSW-RENLFTDYKHPGVSPSFHKEK 9
           KH  CL WCP  G   W R  L    +  GV  +  +E+
Sbjct: 63  KHGNCLHWCPPSGGRRWERRRLGEKVEEAGVRSTGGEEE 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,870,118
Number of Sequences: 37544
Number of extensions: 153771
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)