Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K21
         (387 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF359283-1|AAK48932.2|  875|Homo sapiens MRIP-1 protein.               28   9.1  

>AF359283-1|AAK48932.2|  875|Homo sapiens MRIP-1 protein.
          Length = 875

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 69  PPRRQPFGRTPPQAGVLTNTITQRKRIFLFDKAEFNFYNVVSLILNFLFYNRDNFLFLYK 248
           P ++Q     PPQ   L+N+   R  I  F+    N Y +  LI         N +  + 
Sbjct: 11  PQQQQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLIERIEDLALQNQIREHV 70

Query: 249 ETI-DSFIN 272
            +I DSF+N
Sbjct: 71  ISIEDSFVN 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,370,585
Number of Sequences: 237096
Number of extensions: 924695
Number of successful extensions: 5385
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5385
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)