Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K21
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z81064-4|CAB02965.1|  394|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AL032644-6|CAA21671.1|  574|Caenorhabditis elegans Hypothetical ...    26   8.1  

>AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical
           protein F18A12.2 protein.
          Length = 274

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -1

Query: 249 LYIKKESCPGYKIKSLKLNLRHYKN*IQPYQTKRSFSFV*SCL 121
           L+   ++C  +  KS+K+ L+ +KN I   + K +++   +CL
Sbjct: 32  LFFDIKNCEKFDFKSIKITLKSHKNRICFEKFKNTYNIDRACL 74


>Z81064-4|CAB02965.1|  394|Caenorhabditis elegans Hypothetical
           protein F16B12.5 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +3

Query: 192 SLILNFLFYNRDNFLFLYKETIDSFIN*LLMS*NLFLKQECFIIIMIVFQLVIK 353
           S+ +++    R + L   KE  +  +N      N+F   + ++ I+ VF ++IK
Sbjct: 26  SIKISWTISKRQDILIAKKE-FEDIVNTFCFDENMFFNSQFYMTIITVFVIIIK 78


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 146 PFPLCDRVCKHTCLRWCPAEGLTSWREN 63
           P  LCD+ C+ TC + C     TS   N
Sbjct: 132 PQLLCDKTCQFTCNKACTPSTSTSSSSN 159


>AL032644-6|CAA21671.1|  574|Caenorhabditis elegans Hypothetical
           protein Y51H1A.6 protein.
          Length = 574

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 191 YDIIKIKFSLIKQKDPFPLCDRVCKH 114
           +D  +I+F   +  D FP+ DR+C H
Sbjct: 252 FDDNEIRFKCAECGDGFPVMDRLCDH 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,254,571
Number of Sequences: 27780
Number of extensions: 150864
Number of successful extensions: 411
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)