Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K20
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          52   3e-08
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    51   1e-07
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.0  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    26   2.6  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   3.4  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    25   4.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   4.5  
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   7.9  

>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
 Frame = +2

Query: 95  MFPPQPEDLEKYQLERCIRILPHHQDTGGFFVAVFEK---ITSLPWE-------KEGKKP 244
           M+P   E++ K  +ERC R+ PH Q+TGGFFVAV +K   I S  ++        E   P
Sbjct: 393 MWPLPEEEMSKLHIERCARLYPHMQNTGGFFVAVLQKTDPINSRSFDPKKYTASMEILPP 452

Query: 245 EETADXXXXXXXXXXXXXXXXMGG--YREDPFVFFSGDTEDVYPSITEFYDLKEDF 406
           E                     G   + E+PFV+ + D   +  +I +FY +   F
Sbjct: 453 ENKRQRTEKGVDEASNSTLTKSGNSYFDEEPFVYINPDDTSI-KTIVDFYGIDPSF 507


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 21/52 (40%), Positives = 34/52 (65%)
 Frame = +2

Query: 62  PEKWQTVVRPQMFPPQPEDLEKYQLERCIRILPHHQDTGGFFVAVFEKITSL 217
           P++    + P ++P   ++L +  ++ C+RI PH Q+TGGFFVAV EK  +L
Sbjct: 353 PKELYEKMPPTLWPLPKKELAELNIQNCLRIYPHFQNTGGFFVAVLEKYENL 404


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 326 DPFVFFSGDTEDVYPSITEFYDLKEDFNASCLLTRCHVGKQKNL 457
           DPF + SG+ +  YP++ +     +D     L+   H+G +K L
Sbjct: 609 DPFDYSSGEPDSQYPTVLKIIKFDDDEVLHTLIN--HLGIEKML 650


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 231 SFSQGNEV-IFSKTATKKPPVSWWCGR 154
           S  +G+ + I SKT T+  P  WW GR
Sbjct: 243 SLKKGDIIAILSKTDTQGNPCEWWQGR 269


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 320  REDPFVFFSGDTEDVYPSITEFYDLKEDFNAS 415
            + DPFV F    E+VY + T    L   FN S
Sbjct: 1057 KSDPFVVFELQGEEVYRTKTHKRTLNPTFNES 1088


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 130 ILLQVFRLWGEHLRSHHSLPL 68
           ILL+  ++W  H+ S  +LPL
Sbjct: 163 ILLEFLKIWQNHVNSQTALPL 183


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +1

Query: 49   NTKMSREVADCGETANVPPTTGRPGEVSARKMHKNPTAPP 168
            +T +++E+   G    +P    RP     +     P APP
Sbjct: 928  STGLTQEITQLGSNMRLPTKLTRPSNDGRKASGPRPAAPP 967


>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 409 IKIFFQIVKLCYRGVNVFCVTGEEYERV 326
           +KI+F ++ L  +G+N   V+ EE E V
Sbjct: 4   LKIYFVLIFLFLKGINSAYVSNEEGETV 31


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 50  IRRCPEKWQTVVRPQMFPPQPEDLEKYQLERCIRILPHHQDT 175
           I+ CP+  QT++       + +DL +  L R +R+   ++ T
Sbjct: 430 IQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKT 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,618
Number of Sequences: 5004
Number of extensions: 33342
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)