Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K20
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602...    43   1e-04
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277...    30   1.1  
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296...    28   4.5  
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    27   6.0  

>09_04_0480 +
           17958726-17958926,17959294-17959382,17960176-17960242,
           17960329-17960444,17960978-17961044,17961158-17961206,
           17961630-17961715,17961825-17962078,17962158-17962213,
           17962683-17962768,17963047-17963139,17963790-17964219,
           17964338-17964861,17964962-17965190,17965271-17965566
          Length = 880

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = +2

Query: 128 YQLERCIRILPHHQDTGGFFVAVFEKITSLPWEKEGK 238
           + L RC+RI+PH Q++G FF+AV +KI+ +   +E +
Sbjct: 501 FPLHRCMRIVPHDQNSGAFFIAVLQKISPINGNQEAE 537


>09_06_0199 +
           21526872-21527250,21527431-21527594,21527673-21527736,
           21528001-21528134,21528302-21528385,21528526-21528600,
           21528683-21528754,21528852-21528925,21529185-21529282,
           21529355-21529464,21529794-21529862,21529944-21530018,
           21530519-21530611,21530690-21530769,21530877-21530976,
           21531150-21531586,21531676-21531706,21532873-21533822,
           21533982-21534201
          Length = 1102

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 134 LERCIRILPHHQDTGGFFVAVFEKIT-SLPWEKEGKK-PEETAD 259
           L++  R  PH  +  GFFVA  +K++ ++P   E  K PEE  +
Sbjct: 537 LDKTRRFYPHVNNMDGFFVAKLKKLSNTIPVTSESSKVPEEAIE 580


>02_05_0583 +
           30128795-30129158,30129342-30129505,30129602-30129665,
           30130082-30130215,30130369-30130452,30130580-30130654,
           30130734-30130805,30130892-30130965,30131217-30131269,
           30131388-30131497,30131824-30131892,30131975-30132049,
           30132449-30132508,30132555-30132647,30132718-30132797,
           30132877-30132976,30133153-30133590
          Length = 702

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 134 LERCIRILPHHQDTGGFFVAVFEKIT-SLPWEKEGKK-PEETAD 259
           L++  R  PH  +  GFFVA  +K++ ++P   E    PEE  +
Sbjct: 537 LDKTRRFYPHVNNMDGFFVAKLKKLSNTIPVASESSNVPEEAIE 580


>12_01_1024 -
           10467644-10469274,10469424-10469482,10469820-10470357,
           10470975-10471666,10471912-10472062,10473797-10473864,
           10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 192 ATKKPPVSWWCGRILM 145
           +TKK    WWCG++ M
Sbjct: 912 STKKKVAGWWCGKVWM 927


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,581,483
Number of Sequences: 37544
Number of extensions: 244909
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)