Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_K20
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-9|AAK29904.3| 639|Caenorhabditis elegans Hypothetical ... 53 9e-08
AL132949-37|CAB70100.3| 285|Caenorhabditis elegans Hypothetical... 33 0.11
AL132949-4|CAB70101.2| 439|Caenorhabditis elegans Hypothetical ... 33 0.11
Z81561-1|CAB04552.2| 550|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z81016-2|CAB02663.1| 246|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z49936-2|CAA90181.1| 586|Caenorhabditis elegans Hypothetical pr... 28 4.1
AY834228-1|AAV91314.1| 589|Caenorhabditis elegans Toll and inte... 28 4.1
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 27 5.4
AF036702-13|AAB88379.2| 648|Caenorhabditis elegans Hypothetical... 27 5.4
AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical ... 27 7.1
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 27 7.1
AC024776-11|AAK68461.1| 349|Caenorhabditis elegans Hypothetical... 27 7.1
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 27 9.4
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 27 9.4
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 27 9.4
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 27 9.4
>AC025721-9|AAK29904.3| 639|Caenorhabditis elegans Hypothetical
protein Y48G8AL.5 protein.
Length = 639
Score = 53.2 bits (122), Expect = 9e-08
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = +2
Query: 65 EKWQTVVRPQMFPPQPEDLEKYQLERCIRILPHHQDTGGFFVAVFEKITSLPWE 226
EK + V+ +FPP ++ ++ L +RI PH QDTGGFFVA+ EK++ ++
Sbjct: 372 EKMKKVIVSSLFPPTEQEAKEMNLHFTMRITPHAQDTGGFFVALIEKVSETSFD 425
>AL132949-37|CAB70100.3| 285|Caenorhabditis elegans Hypothetical
protein Y53F4B.4a protein.
Length = 285
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 119 LEKYQL-ERCIRILPHHQDTGGFFVAVFEKITS 214
L+ Y++ E C+R P T GFFVAVFE++ S
Sbjct: 251 LKTYEVGEHCLRANPKVTLTNGFFVAVFERVKS 283
>AL132949-4|CAB70101.2| 439|Caenorhabditis elegans Hypothetical
protein Y53F4B.4b protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 119 LEKYQL-ERCIRILPHHQDTGGFFVAVFEKITS 214
L+ Y++ E C+R P T GFFVAVFE++ S
Sbjct: 405 LKTYEVGEHCLRANPKVTLTNGFFVAVFERVKS 437
>Z81561-1|CAB04552.2| 550|Caenorhabditis elegans Hypothetical
protein K03D10.3 protein.
Length = 550
Score = 31.1 bits (67), Expect = 0.44
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 98 FPPQPEDLEKYQLERCIRILPHHQ 169
FPP E+L+ Y E C+ PHH+
Sbjct: 207 FPPDCENLDIYMCEYCLLYTPHHE 230
>Z81016-2|CAB02663.1| 246|Caenorhabditis elegans Hypothetical
protein F21G4.4 protein.
Length = 246
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 50 IRRCPEKWQTVVRPQMFPPQPEDLEKYQLERCIRILPHHQDTGGFFVAVFEKITSL-PWE 226
+ R PE+ + P +F P+P L + CIR+ H F E +T L P
Sbjct: 36 LERYPERGHLYLGPILFGPEPYKLR--ACKTCIRLARHGLSASRFTAEEIENMTELCPTH 93
Query: 227 KEGKKPEETA 256
+ + EE A
Sbjct: 94 LDEQLSEERA 103
>Z49936-2|CAA90181.1| 586|Caenorhabditis elegans Hypothetical
protein F13B10.1b protein.
Length = 586
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 50 IRRCPEKWQTVVRPQMFPPQPE-DLEKYQLERCIRIL-PHHQDTGGFFVAVFEKITSLPW 223
+++ P K V+RPQMF + LE+++ + R P+ ++ G + +++ S P
Sbjct: 133 LKKLPMKTALVIRPQMFVKENSVQLERFRKSKTRRFFHPYAKEIGA--IQALKEVASSPD 190
Query: 224 EKEGKKPEE 250
E K E
Sbjct: 191 EVAAKFASE 199
>AY834228-1|AAV91314.1| 589|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform f protein.
Length = 589
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 50 IRRCPEKWQTVVRPQMFPPQPE-DLEKYQLERCIRIL-PHHQDTGGFFVAVFEKITSLPW 223
+++ P K V+RPQMF + LE+++ + R P+ ++ G + +++ S P
Sbjct: 133 LKKLPMKTALVIRPQMFVKENSVQLERFRKSKTRRFFHPYAKEIGA--IQALKEVASSPD 190
Query: 224 EKEGKKPEE 250
E K E
Sbjct: 191 EVAAKFASE 199
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 52 TKMSREVADCGETANVPPTTGRPGEVSARKMHKNPTAP 165
T S V G + PP T PG VS + PT P
Sbjct: 213 TPPSPSVTPGGRPGSTPPATFPPGSVSTVRYTPGPTPP 250
>AF036702-13|AAB88379.2| 648|Caenorhabditis elegans Hypothetical
protein F33D4.6b protein.
Length = 648
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 65 EKWQTVVRPQMFPPQPEDLEKYQLERCIRILPHHQDT 175
E+W+T V P + PP E E++ ++ P Q+T
Sbjct: 429 EQWKTQVAPSVSPPSEEFAEQFDGVDEVQESPKRQET 465
>AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical
protein W07E6.1 protein.
Length = 664
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 149 RILPHHQDTGGFFVAVFEKITSLPWEKEGKKPEE 250
R PH + GF+VA +K+++ K+G +E
Sbjct: 490 RYYPHVHNIDGFYVAKIKKLSNAKMSKQGVMEKE 523
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 52 TKMSREVADCGETANVPPTTGRPGEVSARKMHKNPTAP 165
T S V G + PP T PG +S + PT P
Sbjct: 136 TPPSPSVTPGGRPGSTPPATFPPGSISTVRYTPGPTPP 173
>AC024776-11|AAK68461.1| 349|Caenorhabditis elegans Hypothetical
protein Y41D4B.11 protein.
Length = 349
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 1 ARGTGDRLRRIWCSMINTKMSREVADCGETANVPPTTG 114
AR + ++ RR ++IN SRE+ + GE + PPT G
Sbjct: 239 ARKSDEQKRRAGEALIN---SREIIEFGERNDAPPTFG 273
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 53 RRCPEKWQTVV---RPQMFPPQPEDLEKYQLE 139
++C EKW+T+V + + + +D E+YQ E
Sbjct: 78 KKCSEKWKTMVDDEKRRFYELAQKDAERYQAE 109
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 53 RRCPEKWQTVV---RPQMFPPQPEDLEKYQLE 139
++C EKW+T+V + + + +D E+YQ E
Sbjct: 79 KKCSEKWKTMVDDEKRRFYELAQKDAERYQAE 110
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 53 RRCPEKWQTVV---RPQMFPPQPEDLEKYQLE 139
++C EKW+T+V + + + +D E+YQ E
Sbjct: 79 KKCSEKWKTMVDDEKRRFYELAQKDAERYQAE 110
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 53 RRCPEKWQTVV---RPQMFPPQPEDLEKYQLE 139
++C EKW+T+V + + + +D E+YQ E
Sbjct: 79 KKCSEKWKTMVDDEKRRFYELAQKDAERYQAE 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,290,948
Number of Sequences: 27780
Number of extensions: 194403
Number of successful extensions: 569
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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