Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K19
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   0.80 
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    26   1.8  
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    25   5.6  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    24   7.4  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    24   7.4  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    24   9.8  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    24   9.8  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    24   9.8  
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    24   9.8  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -1

Query: 283 FHRQETILSHDHKVHEETSRSLNHANLSIRHRYQSLVNEFISERVTRLSLHNVG 122
           F   E +L H+  +HEE +     + LS  + + SLV E   ERVT   ++ VG
Sbjct: 474 FLNTEELLIHERILHEEKNLKFALSELSNSNIFDSLVCE-ERERVTDDIVYEVG 526


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -1

Query: 355 PILSIGVGQVIDSIGIPLLSDTKQFHRQETILSHDHKVHEETSRSLN 215
           PI+S G+      IGI + +++ +F + E + S +  +H++   + N
Sbjct: 219 PIISDGIMDHFQHIGINVHTNSLEFKKVEKLPSGELCIHQQDGSTFN 265


>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = -1

Query: 268 TILSHDHKVHEETSRSLNHANLSIRHRYQSLVNEFISERVT 146
           T+ S  H         ++ +++ +++RY   +N F+ +R T
Sbjct: 26  TVKSPTHNCGSGVKTIMDKSSIFLKNRYPISINRFVQQRKT 66


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 294  IPNSFIGRKPFSAMITKYTKKP 229
            +PN+F    PF A+I  +  +P
Sbjct: 1033 LPNAFAPNSPFQALIKHFCSEP 1054


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
 Frame = +2

Query: 89  PAISLAYEEAESDIMKRQPRNPFTDKLVNE-RLISMAYGQIGMIQAAAGFFVYFVIMAEN 265
           PA+     E +    ++     FT+  V   RL  +      ++    GF  YF + A  
Sbjct: 86  PALPAINPEKDDIYFQQIDSEEFTEGSVPSIRLFGVTDNGNSILVHVVGFLPYFYVKAPV 145

Query: 266 GFLPMKLFGIRKQWDSNAINDLTD 337
           GF P  L    +  D+     + D
Sbjct: 146 GFRPEMLERFTQDLDATCNGGVID 169


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = -1

Query: 283 FHRQETILSHDHKVHEETSRSLNHANLSIRHRYQSLVNEFISERVTRLSLHNV 125
           F  Q  + S +  VHE+ ++    + +   +R     NE        + LHN+
Sbjct: 160 FSNQREVESLEQLVHEQLNKLNTESKMEFENRKNDTKNEVQQLSARIVELHNL 212


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 254 MAENGFLPMKLFGIRKQWDSNAINDLTDSYGQDRTYRD 367
           M +NG++  +   + +    NAIND+   Y  D  Y D
Sbjct: 224 MRKNGWMDRENVIVYETTWENAINDIASKYVFDGIYYD 261


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 227 AGFFVYFVIMAENGFLPMKLFGI 295
           AGF  Y V  A+N   P KLF I
Sbjct: 229 AGFIAYGVQYAKNTISPWKLFMI 251


>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = +2

Query: 35  LPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLI 187
           LP G+ T++  +    ++  + L   E  + +  R+P+N     ++NE ++
Sbjct: 14  LPAGSTTVVHAEKAQKLIQKLGLKRVEGITRVAMRRPKNILL--IINEPIV 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,719
Number of Sequences: 5004
Number of extensions: 35587
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)