Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_K19
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 42 1e-04
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102... 39 0.001
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 35 0.027
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 34 0.048
08_02_1257 - 25646029-25646054,25646139-25646236,25646609-256467... 33 0.083
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 32 0.19
02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419... 31 0.34
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 30 0.59
02_05_0580 - 30117806-30118519 30 0.59
05_03_0373 - 13194723-13195847,13196219-13196809 29 1.0
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 1.0
10_08_0019 - 14167952-14171059 29 1.4
01_06_0891 - 32752825-32752932,32753085-32753176,32753293-327534... 28 3.1
04_01_0411 + 5449769-5450662,5450753-5451382 27 4.1
02_04_0400 - 22608519-22608844,22609044-22609122 27 5.5
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110 26 9.6
07_03_0632 - 20112297-20116562 26 9.6
06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615 26 9.6
02_01_0439 - 3183975-3183989,3184044-3184132,3184767-3184840,318... 26 9.6
>03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 42.3 bits (95), Expect = 1e-04
Identities = 29/88 (32%), Positives = 42/88 (47%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQI 208
IP L V +L ++L TD PA +L + + DIMK+ PR D L+ ++ Y I
Sbjct: 816 IPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRS-DDSLITPWIL-FRYMVI 873
Query: 209 GMIQAAAGFFVYFVIMAENGFLPMKLFG 292
GM A V+ + FL + L G
Sbjct: 874 GMYVGIATVGVFIIWYTHGSFLGIDLAG 901
>05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,
1022753-1023031,1023402-1023779,1024079-1024188,
1024394-1024622,1024725-1025303
Length = 1055
Score = 39.1 bits (87), Expect = 0.001
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQI 208
IP L V +L ++L TD PA +L + + DIMK+ PR D L+ ++ Y I
Sbjct: 808 IPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRKS-DDSLITPWIL-FRYLVI 865
Query: 209 GMIQAAAGFFVYFVIMAENGFLPMKLFG 292
G+ A ++ + F+ + L G
Sbjct: 866 GLYVGIATVGIFVIWYTHGSFMGIDLTG 893
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 34.7 bits (76), Expect = 0.027
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -1
Query: 340 GVGQVIDSIGIPLLSDTKQFHRQETILSHDHKVHEETSRSLNHANLSIRHRYQSLVNEFI 161
G G ++IGI + DT F Q+ + S +H E +++L H + HR + +VN
Sbjct: 717 GKGNTAETIGIREIVDTNIFGTQDQMKSSMTAIHNE-NKNLYHCGIVYAHRNEDVVNTRT 775
Query: 160 SE 155
+E
Sbjct: 776 NE 777
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 33.9 bits (74), Expect = 0.048
Identities = 21/43 (48%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 22 GRYPATPRHRHHPLHRSGNRH-GARHFPGLRGGRIRHYEATAA 147
GR A PR HR RH GARH PG R R R +EA A
Sbjct: 156 GRRAAGPRALERLAHRRAARHVGARHGPGRRVQRRRLWEAPPA 198
>08_02_1257 - 25646029-25646054,25646139-25646236,25646609-25646700,
25646786-25646893,25647212-25647346,25647648-25647752,
25647951-25648088,25648865-25648963,25649079-25649195,
25649446-25649610,25649955-25650014,25650395-25650559,
25650636-25650746,25651220-25651333,25651466-25651531,
25651857-25651994,25652303-25652386,25652468-25652510,
25652621-25652676,25652772-25652880,25652944-25653026,
25653127-25653210,25653383-25653454,25653557-25653634,
25653717-25653800,25653892-25653962,25654095-25654164,
25654314-25654403,25654500-25654661,25654702-25654817,
25654946-25654988,25655069-25655185,25655897-25656046
Length = 1082
Score = 33.1 bits (72), Expect = 0.083
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 23 GDIPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQP 145
GD+PL V +L ++L D + A++LA E ++MKRQP
Sbjct: 887 GDVPL--NAVELLWVNLIMDTLGALALATEPPTDNLMKRQP 925
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 38 PLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQP 145
PL V +L +++ D + A++LA E D+MKR+P
Sbjct: 842 PLTAVQLLWVNMIMDTLGALALATEPPNDDLMKREP 877
>02_01_0570 -
4195409-4195443,4196245-4196333,4196539-4196630,
4196726-4196833,4196984-4197118,4197211-4197256,
4197358-4197458,4198285-4198422,4198503-4198601,
4198740-4198856,4199195-4199356,4199734-4199793,
4200371-4200538,4200608-4200718,4201401-4201499,
4201579-4201644,4202407-4202490,4202563-4202605,
4202684-4202739,4202817-4202925,4203442-4203524,
4203842-4203925,4204311-4204382,4204462-4204539,
4204633-4204716,4204806-4204876,4205943-4206012,
4206495-4206626,4207168-4207284,4208185-4208367
Length = 963
Score = 31.1 bits (67), Expect = 0.34
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +2
Query: 35 LPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQP---RNPFTDKLVNERLISMAYGQ 205
+PL V +L ++L D + A++LA E +MKR P + P ++ L A Q
Sbjct: 756 VPLNAVQLLWVNLIMDTLGALALATEPPTDQLMKRPPVGRKEPLVTNIMWRNLFIQAVFQ 815
Query: 206 IGMI 217
+ ++
Sbjct: 816 VTVL 819
>03_05_1014 -
29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPR 148
+P L V +L ++L TD +PA ++ + + +S+IM +PR
Sbjct: 827 MPDTLVPVQLLWVNLVTDGLPATAIGFNKPDSNIMTVKPR 866
>02_05_0580 - 30117806-30118519
Length = 237
Score = 30.3 bits (65), Expect = 0.59
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = -2
Query: 135 FIMSDSASS*AREMAGTMSVPRSMQRMVTVPRGSGISPSCRI 10
F D S AR GTM + R +QR V R S IS CRI
Sbjct: 117 FAAVDHDSFAARGAEGTMLLHRHVQRSVVDGRASRISVGCRI 158
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 151 VTRLSLHNVGFGLLVSQGNGGHH---VGSQIDAEDGDGAEG 38
V R++ VG+ + QG+G HH VG ++D + GD G
Sbjct: 87 VPRVTYRVVGWVSVQGQGDGRHHAVRVGLRVDGDGGDDERG 127
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 16 ARGRYPATPRHRHHP--LHRSGNRHG--ARHFPGLRGGRIRHYEATA 144
AR R+ HRHH HR G+ HG H+ G R RH+ A
Sbjct: 526 ARRRHQKGRHHRHHHDHRHRHGHSHGDHHHHYHGGHHQRRRHHHPPA 572
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 35 LPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQP 145
+PL TV +L ++L D + A++LA + + +M+R P
Sbjct: 844 MPLTTVQLLWVNLIMDTMGALALATDTPTAGLMRRPP 880
>01_06_0891 -
32752825-32752932,32753085-32753176,32753293-32753408,
32754055-32755969,32756037-32756171,32756549-32756870
Length = 895
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 95 ISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQIGMIQAAAGFFVYFVIMAENGF 271
++L ++ ++ M R+ N T+ L R+ +YG G Q G F +NGF
Sbjct: 453 LTLGFKSSKPVSMGRETLNVATETLAAGRIQMDSYGDRGAFQNQMGIFPLRAERNQNGF 511
>04_01_0411 + 5449769-5450662,5450753-5451382
Length = 507
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 11 IRHEGDIPLPLGTVTI--LCIDLGTDMVPAISLAYEEAESDIMK 136
IR +GD+ P GT I + +D+ T S A E S++M+
Sbjct: 278 IRDQGDLEFPFGTTNIKAIILDMFTGGTETTSSAAEWVMSELMR 321
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +1
Query: 22 GRYPATPRHRHHPLHRSGNRHGARHFPGLRG 114
G YP P H H+P H G R G H G RG
Sbjct: 100 GYYPPGPGHHHNP-HWHGCRWGCCH-RGYRG 128
>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
Length = 530
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 100 GNGGHHVGSQIDAEDGDGAEG 38
G GG H G+++ A DG G G
Sbjct: 125 GGGGGHGGNEVAAPDGGGGGG 145
>07_03_0632 - 20112297-20116562
Length = 1421
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 177 SLTSLSVKGLRGCRF 133
SL +L V GLRGCRF
Sbjct: 752 SLCNLQVLGLRGCRF 766
>06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615
Length = 390
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 31 PATPRHRHHPLHRS 72
PATP HRHH RS
Sbjct: 41 PATPTHRHHHHRRS 54
>02_01_0439 -
3183975-3183989,3184044-3184132,3184767-3184840,
3184935-3185029,3185585-3185677,3185754-3185851,
3185947-3186044,3186912-3187159
Length = 269
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -1
Query: 334 GQVIDSIGIPLLSDTKQFHRQETILSHDHKVHEETSRSLNHANLSIRHRYQSLVN 170
GQV S+ + L + + T+L++ K E S ++ A ++ SLVN
Sbjct: 214 GQVKKSLSVTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALSLVN 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,462,052
Number of Sequences: 37544
Number of extensions: 270184
Number of successful extensions: 999
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -