Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_K19
(397 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical pr... 208 1e-54
U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alp... 208 1e-54
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr... 155 8e-39
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p... 155 8e-39
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ... 58 2e-09
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ... 58 2e-09
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical... 52 2e-07
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 51 3e-07
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp... 51 3e-07
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical... 51 3e-07
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 51 3e-07
Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical pr... 36 0.014
Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical pr... 36 0.014
AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPas... 36 0.014
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 0.91
U80847-2|AAB37982.2| 475|Caenorhabditis elegans Hypothetical pr... 28 2.8
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 28 2.8
AF098987-5|ABD63222.1| 263|Caenorhabditis elegans Hypothetical ... 28 2.8
AF098987-4|AAC67429.1| 496|Caenorhabditis elegans Hypothetical ... 28 2.8
U41991-12|AAA83352.1| 251|Caenorhabditis elegans Hypothetical p... 27 3.7
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical pr... 27 4.9
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 27 4.9
AC006629-9|ABC48255.1| 319|Caenorhabditis elegans Hypothetical ... 27 4.9
Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z37092-10|CAA85459.1| 280|Caenorhabditis elegans Hypothetical p... 27 6.4
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 27 6.4
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 27 6.4
Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical pr... 26 8.5
U97403-5|AAO21397.1| 268|Caenorhabditis elegans Hypothetical pr... 26 8.5
U97403-4|AAB52474.2| 445|Caenorhabditis elegans Hypothetical pr... 26 8.5
AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical ... 26 8.5
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 26 8.5
AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched relat... 26 8.5
>Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical protein
B0365.3 protein.
Length = 996
Score = 208 bits (507), Expect = 1e-54
Identities = 96/123 (78%), Positives = 108/123 (87%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQI 208
IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPR+P DKLVNERLIS+AYGQI
Sbjct: 771 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRDPIRDKLVNERLISLAYGQI 830
Query: 209 GMIQAAAGFFVYFVIMAENGFLPMKLFGIRKQWDSNAINDLTDSYGQDRTYRDRKALEFT 388
GMIQA+AGFF YF IMA+NGF+P L+ +R QWDS A N++ DSYGQ+ TY +RK LE+T
Sbjct: 831 GMIQASAGFFTYFWIMADNGFMPWDLYQLRAQWDSRAYNNVLDSYGQEWTYANRKILEYT 890
Query: 389 CHT 397
C T
Sbjct: 891 CQT 893
>U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alpha
subunit protein.
Length = 996
Score = 208 bits (507), Expect = 1e-54
Identities = 96/123 (78%), Positives = 108/123 (87%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQI 208
IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPR+P DKLVNERLIS+AYGQI
Sbjct: 771 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRDPIRDKLVNERLISLAYGQI 830
Query: 209 GMIQAAAGFFVYFVIMAENGFLPMKLFGIRKQWDSNAINDLTDSYGQDRTYRDRKALEFT 388
GMIQA+AGFF YF IMA+NGF+P L+ +R QWDS A N++ DSYGQ+ TY +RK LE+T
Sbjct: 831 GMIQASAGFFTYFWIMADNGFMPWDLYQLRAQWDSRAYNNVLDSYGQEWTYANRKILEYT 890
Query: 389 CHT 397
C T
Sbjct: 891 CQT 893
>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical protein
C01G12.8 protein.
Length = 1049
Score = 155 bits (377), Expect = 8e-39
Identities = 72/122 (59%), Positives = 87/122 (71%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQI 208
+PLP+ + IL IDLGTD+ PAIS AYE ESDIM+R PRNP DKLVN+RL+ +Y QI
Sbjct: 824 LPLPMSIIAILMIDLGTDLWPAISFAYEVPESDIMQRAPRNPLYDKLVNKRLVMFSYMQI 883
Query: 209 GMIQAAAGFFVYFVIMAENGFLPMKLFGIRKQWDSNAINDLTDSYGQDRTYRDRKALEFT 388
G IQA AGF YFV+M NG+ P L I +QWD+ I+DL DSYGQ +Y RKALE
Sbjct: 884 GAIQACAGFTTYFVLMMSNGWFPQDLLNISEQWDNKYIDDLEDSYGQQWSYESRKALESC 943
Query: 389 CH 394
C+
Sbjct: 944 CY 945
>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
protein C01G12.8 protein.
Length = 1049
Score = 155 bits (377), Expect = 8e-39
Identities = 72/122 (59%), Positives = 87/122 (71%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQI 208
+PLP+ + IL IDLGTD+ PAIS AYE ESDIM+R PRNP DKLVN+RL+ +Y QI
Sbjct: 824 LPLPMSIIAILMIDLGTDLWPAISFAYEVPESDIMQRAPRNPLYDKLVNKRLVMFSYMQI 883
Query: 209 GMIQAAAGFFVYFVIMAENGFLPMKLFGIRKQWDSNAINDLTDSYGQDRTYRDRKALEFT 388
G IQA AGF YFV+M NG+ P L I +QWD+ I+DL DSYGQ +Y RKALE
Sbjct: 884 GAIQACAGFTTYFVLMMSNGWFPQDLLNISEQWDNKYIDDLEDSYGQQWSYESRKALESC 943
Query: 389 CH 394
C+
Sbjct: 944 CY 945
>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
protein C09H5.2b protein.
Length = 1039
Score = 58.4 bits (135), Expect = 2e-09
Identities = 36/85 (42%), Positives = 47/85 (55%)
Frame = +2
Query: 32 PLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQIG 211
PL L V IL IDL TD+ PA+SLAYE E+DIM + PR T LV + LI+ Y +
Sbjct: 831 PLGLTPVQILSIDLITDIPPAVSLAYEGPEADIMLQPPRKRET-HLVTKGLITYTYLFMS 889
Query: 212 MIQAAAGFFVYFVIMAENGFLPMKL 286
+ + G Y + NG P +L
Sbjct: 890 IFISVGGVVAYLLSYYLNGIYPSEL 914
>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
protein C09H5.2a protein.
Length = 1054
Score = 58.4 bits (135), Expect = 2e-09
Identities = 36/85 (42%), Positives = 47/85 (55%)
Frame = +2
Query: 32 PLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQIG 211
PL L V IL IDL TD+ PA+SLAYE E+DIM + PR T LV + LI+ Y +
Sbjct: 831 PLGLTPVQILSIDLITDIPPAVSLAYEGPEADIMLQPPRKRET-HLVTKGLITYTYLFMS 889
Query: 212 MIQAAAGFFVYFVIMAENGFLPMKL 286
+ + G Y + NG P +L
Sbjct: 890 IFISVGGVVAYLLSYYLNGIYPSEL 914
>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
protein C02E7.1 protein.
Length = 1050
Score = 51.6 bits (118), Expect = 2e-07
Identities = 34/85 (40%), Positives = 46/85 (54%)
Frame = +2
Query: 32 PLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQIG 211
PL L V IL IDL +D+ PA+SLAYE E+DIM + PR T LV + LI+ Y +
Sbjct: 827 PLGLTPVQILSIDLISDIPPAVSLAYEGPEADIMLQPPRKKDT-HLVTKGLITYTYLFMS 885
Query: 212 MIQAAAGFFVYFVIMAENGFLPMKL 286
+ + Y + NG P +L
Sbjct: 886 IFISIGCVCAYLLSYYINGIGPWEL 910
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 50.8 bits (116), Expect = 3e-07
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAY 199
+P L + IL +DL ++M PAISLAYE+ E+DIM PR+ T +L+++ L+ AY
Sbjct: 897 LPHGLSPLQILSVDLASEMPPAISLAYEQPENDIMHTPPRSR-TARLLSKSLLVYAY 952
>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1045
Score = 50.8 bits (116), Expect = 3e-07
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAY 199
+P L + IL +DL ++M PAISLAYE+ E+DIM PR+ T +L+++ L+ AY
Sbjct: 897 LPHGLSPLQILSVDLASEMPPAISLAYEQPENDIMHTPPRSR-TARLLSKSLLVYAY 952
>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
protein Y105E8A.12b protein.
Length = 1045
Score = 50.8 bits (116), Expect = 3e-07
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAY 199
+P L + IL +DL ++M PAISLAYE+ E+DIM PR+ T +L+++ L+ AY
Sbjct: 897 LPHGLSPLQILSVDLASEMPPAISLAYEQPENDIMHTPPRSR-TARLLSKSLLVYAY 952
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 50.8 bits (116), Expect = 3e-07
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAY 199
+P L + IL +DL ++M PAISLAYE+ E+DIM PR+ T +L+++ L+ AY
Sbjct: 897 LPHGLSPLQILSVDLASEMPPAISLAYEQPENDIMHTPPRSR-TARLLSKSLLVYAY 952
>Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical protein
K11D9.2b protein.
Length = 1004
Score = 35.5 bits (78), Expect = 0.014
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQI 208
IP L V +L ++L TD +PA +L + + DIM R PR+ D L++ L Y +
Sbjct: 784 IPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRHPRSA-NDGLISGWLF-FRYLAV 841
Query: 209 GMI--QAAAGFFVYFVIMAENG 268
G A G +++ ++ E G
Sbjct: 842 GTYVGVATVGASMWWFLLYEEG 863
>Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical protein
K11D9.2a protein.
Length = 1059
Score = 35.5 bits (78), Expect = 0.014
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQI 208
IP L V +L ++L TD +PA +L + + DIM R PR+ D L++ L Y +
Sbjct: 784 IPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRHPRSA-NDGLISGWLF-FRYLAV 841
Query: 209 GMI--QAAAGFFVYFVIMAENG 268
G A G +++ ++ E G
Sbjct: 842 GTYVGVATVGASMWWFLLYEEG 863
>AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPase
protein.
Length = 1059
Score = 35.5 bits (78), Expect = 0.014
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +2
Query: 29 IPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRQPRNPFTDKLVNERLISMAYGQI 208
IP L V +L ++L TD +PA +L + + DIM R PR+ D L++ L Y +
Sbjct: 784 IPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRHPRSA-NDGLISGWLF-FRYLAV 841
Query: 209 GMI--QAAAGFFVYFVIMAENG 268
G A G +++ ++ E G
Sbjct: 842 GTYVGVATVGASMWWFLLYEEG 863
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.5 bits (63), Expect = 0.91
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 22 GRYPATPRHRHHPLHRSGNRHGARHFPGLRGGRIRHYE 135
G + + H HH H G HGA H P G H+E
Sbjct: 659 GTHHSLAHHGHHGGH--GTHHGAHHSPAHHGHHGAHHE 694
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +1
Query: 34 ATPRHRHHPLHRSGN-RHGARHFPGLRGGRIRHYEATA 144
A H HH H + + HG+ H P G H+ A A
Sbjct: 477 APAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPA 514
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +1
Query: 34 ATPRHRHHPLHRSGN-RHGARHFPGLRGGRIRHYEATA 144
A H HH H + + HG+ H P G H+ A A
Sbjct: 535 APAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPA 572
>U80847-2|AAB37982.2| 475|Caenorhabditis elegans Hypothetical
protein C17H11.1 protein.
Length = 475
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -2
Query: 390 QVNSRALRSLYVRSCP*ESVKSLIALESHCFLIPNSFIGRKPFSAMITKYTKKPAAA*IM 211
Q+ + R L RS P + + I+ +S + NSF R+ S +I +T+K ++
Sbjct: 246 QITKKRRRRLVRRSSPQNEIPNGISADSESNV--NSFTMRREDSNLIRSFTEKKLTVLMI 303
Query: 210 PIC 202
IC
Sbjct: 304 SIC 306
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +1
Query: 22 GRYPATPRHRHHPLHRSGNRHGARHFPGLRGGRIR-HYEA 138
G + H HH H G HG H GG HYE+
Sbjct: 42 GHHGHMDTHHHHDSHHHGGHHGGHH-----GGHYESHYES 76
>AF098987-5|ABD63222.1| 263|Caenorhabditis elegans Hypothetical
protein F40H3.1b protein.
Length = 263
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 312 ESHCFLIPNSFIGRKPFSAMITKYT 238
E HCF+ P+S I R PF ++ K T
Sbjct: 9 EPHCFIAPSSSIDR-PFKLLVQKET 32
>AF098987-4|AAC67429.1| 496|Caenorhabditis elegans Hypothetical
protein F40H3.1a protein.
Length = 496
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 312 ESHCFLIPNSFIGRKPFSAMITKYT 238
E HCF+ P+S I R PF ++ K T
Sbjct: 242 EPHCFIAPSSSIDR-PFKLLVQKET 265
>U41991-12|AAA83352.1| 251|Caenorhabditis elegans Hypothetical
protein C42D4.1 protein.
Length = 251
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 7 MNSARGRYPATPRHRHHPLHRSGNRHGARHFPGLRGGR 120
M + + YP R P H G+ HG R G R GR
Sbjct: 150 MKAFQSFYPFVGRDSEGPRHGHGHGHGHRFHHGRRFGR 187
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = -1
Query: 274 QETILSHDHKVHEETSRSLNHANLSIRHRYQSLVNEFISERVTRLSLHNVGFGL---LVS 104
QE + H + H+ + HA + ++ +L++ + + + NVG + L S
Sbjct: 387 QEALCIHCVQAHQRVRATKQHAFVELQQLMATLMSRAVQPQQAQQYTQNVGGSVRQALGS 446
Query: 103 QGNGGHHVGSQIDAEDGDG 47
G+G HV + G G
Sbjct: 447 VGSGDGHVSGVENDSIGSG 465
>Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical
protein C14H10.3 protein.
Length = 830
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 226 RSLNHANLSIRHRYQSLVNEFISERVTRLSLHNVGFGLL 110
+ ++H NL + H+ +S+ F S TR + V FG+L
Sbjct: 633 QQISHLNLELVHQLKSVDAAFSSGDCTRYGVSCVKFGML 671
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = -1
Query: 274 QETILSHDHKVHEETSRSLNHANLSIRHRYQSLVNEFISERVTRLSLHNVGFGL---LVS 104
QE + H + H+ + HA + ++ +L++ + + + NVG + L S
Sbjct: 387 QEALCIHCVQAHQRVRATKQHAFVELQQLMATLMSRAVQPQQAQQYTQNVGGSVRQALGS 446
Query: 103 QGNGGHHVGSQIDAEDGDG 47
G+G HV + G G
Sbjct: 447 VGSGDGHVSGVENDSIGSG 465
>AC006629-9|ABC48255.1| 319|Caenorhabditis elegans Hypothetical
protein F12E12.10 protein.
Length = 319
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 366 SLYVRSCP*ESVKSLIALESHCFLIPNSFIGRK 268
S + S P + +K ++ +HC +IP SFI K
Sbjct: 5 SFPIHSLPTKPLKIVLQSFTHCSIIPYSFISNK 37
>Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical
protein K09C8.4 protein.
Length = 633
Score = 26.6 bits (56), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 184 DIYGVWTNWHDSSCGWFLRVLCD 252
DI+ + T+W+ S+C WF L +
Sbjct: 73 DIHELMTSWNISNCEWFFHNLTE 95
>Z37092-10|CAA85459.1| 280|Caenorhabditis elegans Hypothetical
protein F44F4.10 protein.
Length = 280
Score = 26.6 bits (56), Expect = 6.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 28 YPATPRHRHHPLHRSGN 78
Y T +HRH+P+ +SG+
Sbjct: 213 YTTTKKHRHYPVRKSGD 229
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 157 ERVTRLSLHNVGFGLLV--SQGNGGHHVGSQIDAED 56
E + L HN+GF L++ S+G GG + ED
Sbjct: 226 EGLEALKTHNIGFPLMIKASEGGGGKGIRKCTKVED 261
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 157 ERVTRLSLHNVGFGLLV--SQGNGGHHVGSQIDAED 56
E + L HN+GF L++ S+G GG + ED
Sbjct: 226 EGLEALKTHNIGFPLMIKASEGGGGKGIRKCTKVED 261
>Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 26.2 bits (55), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 28 YPATPRHRHHPLHRSGNR 81
Y T +HRH+P+ SG +
Sbjct: 212 YTTTKKHRHYPVRESGGK 229
>U97403-5|AAO21397.1| 268|Caenorhabditis elegans Hypothetical
protein T10E9.7b protein.
Length = 268
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 175 REI-DIYGVWTNWHDSSCGWFLRVLCDHG*EWFP 273
RE+ D+YGVW N H R+L D+G E P
Sbjct: 165 REVYDMYGVWFNNHPD----LRRILTDYGFEGHP 194
>U97403-4|AAB52474.2| 445|Caenorhabditis elegans Hypothetical
protein T10E9.7a protein.
Length = 445
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 175 REI-DIYGVWTNWHDSSCGWFLRVLCDHG*EWFP 273
RE+ D+YGVW N H R+L D+G E P
Sbjct: 342 REVYDMYGVWFNNHPD----LRRILTDYGFEGHP 371
>AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 26.2 bits (55), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 28 YPATPRHRHHPLHRSGNR 81
Y T +HRH+P+ SG +
Sbjct: 212 YTTTKKHRHYPVRESGGK 229
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +1
Query: 22 GRYPATPRHRHHPL-HRSGNRHGARHFPGLRG 114
GR+ H P H G RHG H PG G
Sbjct: 364 GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHG 395
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Frame = +1
Query: 22 GRYPATPRHRHHPLHRSGNR-----HGARHFP 102
GR P+ RH HH H G R HG HFP
Sbjct: 407 GRSPS--RHGHHHHHHHGCRPFPPHHGHHHFP 436
>AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched related
family protein12, isoform a protein.
Length = 901
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 161 DKLVNERLISMAYGQIGMIQAAAGFFVYFVIMAENGFLPMKLFGI 295
D +V R+ S I +I A FF FV++ FL + ++GI
Sbjct: 488 DVIVKRRVTSFLENYISLITNA--FFQIFVVLVWIAFLVVSIYGI 530
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,942,198
Number of Sequences: 27780
Number of extensions: 204370
Number of successful extensions: 614
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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