Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K18
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136...    47   8e-06
03_05_0631 - 26262247-26262287,26262612-26262686,26262768-262628...    29   1.2  
08_02_1120 + 24440589-24440619,24441217-24441268,24442551-244427...    28   2.9  
01_07_0150 + 41508546-41508636,41509384-41510343,41511082-415115...    27   5.0  
03_02_0488 - 8824980-8825267,8825364-8827775                           27   6.6  
01_06_0330 + 28517378-28518266,28518438-28518550                       27   6.6  

>02_05_1262 +
           35312313-35312343,35312840-35312886,35313614-35313660,
           35313740-35313842,35313924-35314691
          Length = 331

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 22/61 (36%), Positives = 35/61 (57%)
 Frame = +2

Query: 29  LNALLGSITSEVQVCQQALNDENDKRDMYKVDDCRRTHNYDEFICTFLSMLAERGALAEL 208
           LN+ L  +TS ++   + +  E +K   ++ ++ RR HNY  F+  FL MLAE+  L  L
Sbjct: 255 LNSELAEVTSAIETVSEKIIMEEEKFKKWRTENIRRKHNYIPFLFNFLKMLAEKKQLKPL 314

Query: 209 V 211
           V
Sbjct: 315 V 315


>03_05_0631 -
           26262247-26262287,26262612-26262686,26262768-26262843,
           26263115-26263156,26263226-26263334,26263660-26263664
          Length = 115

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 371 IAKLIKHFCCLLN 409
           +AK IKHFCC+LN
Sbjct: 81  LAKCIKHFCCILN 93


>08_02_1120 +
           24440589-24440619,24441217-24441268,24442551-24442731,
           24442829-24443048,24443489-24443640,24443724-24443762,
           24446699-24446705,24447081-24447099,24447100-24447399,
           24448125-24448164,24448417-24448633,24448915-24449060,
           24449131-24449169,24449707-24449805
          Length = 513

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +2

Query: 71  CQQALNDENDKRDMYKVDDCRRTHNYDEFICTFLSMLAERGALAELVTA 217
           C +  +D  D  +  K  + +  H Y+   C F    A+ G +   +TA
Sbjct: 199 CVEEWSDSEDDAEYVKTKEAKIRHMYEPITCLFHVRYAKEGHVPSSITA 247


>01_07_0150 +
           41508546-41508636,41509384-41510343,41511082-41511555,
           41511642-41511736
          Length = 539

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 26  DLNALLGSITSEVQVCQQALNDENDKRDMYKVDDCRRT 139
           DLN L G++ ++ +VC   LN E +     KVDD  R+
Sbjct: 243 DLNLLRGTVWTDNKVCYNVLNGEYE----IKVDDPNRS 276


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 19  PLGFERTIGQHHE 57
           P+GF + IGQHHE
Sbjct: 333 PVGFSKDIGQHHE 345


>01_06_0330 + 28517378-28518266,28518438-28518550
          Length = 333

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = -1

Query: 95  SHR*VLAGTPALRS*CCPIVRSN 27
           SH  VLA T ALR   CP VR N
Sbjct: 104 SHTIVLADTDALRGGSCPRVRHN 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,388,463
Number of Sequences: 37544
Number of extensions: 151695
Number of successful extensions: 420
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)