Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K18
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical pr...    42   1e-04
Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical pr...    30   0.64 
Z95559-13|CAB09003.2|  682|Caenorhabditis elegans Hypothetical p...    27   7.9  

>Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical
           protein C08B11.7 protein.
          Length = 321

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 32/54 (59%)
 Frame = +2

Query: 50  ITSEVQVCQQALNDENDKRDMYKVDDCRRTHNYDEFICTFLSMLAERGALAELV 211
           +  ++    +A+ DE+ K +MY+ ++ RR HNY  F+   + +LA+ G L  LV
Sbjct: 242 LEEQIADLNKAIADEDYKMEMYRKENNRRRHNYTPFVIELMKILAKEGKLVGLV 295


>Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical
           protein C16D6.2 protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 117 LYISRLSFSSLSACWHTCTSLVMLPNSAFKSEW 19
           L+I  LS S +  C   CTS  + P +AFK EW
Sbjct: 64  LFILSLSCSDIVVC---CTSATITPITAFKKEW 93


>Z95559-13|CAB09003.2|  682|Caenorhabditis elegans Hypothetical
           protein Y41E3.1a protein.
          Length = 682

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 2   HEVLLSHSDLNALLGSITSEVQVCQQALNDENDKRDMYKVDDCRRTHNYDEFICTFLSML 181
           H+ LLSH D+N L+G    ++      +NDE    D   +      H + +   T    L
Sbjct: 381 HQSLLSHDDIN-LVGVEDEDLSAHLSHMNDEGLFDDSVVIVMADHGHRFAKLRDTHQGQL 439

Query: 182 AER 190
            ER
Sbjct: 440 EER 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,102,643
Number of Sequences: 27780
Number of extensions: 133093
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)