Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K16
         (246 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         29   0.086
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    28   0.20 
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    25   1.8  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    24   2.4  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    23   4.3  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    23   4.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    23   5.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    23   5.6  

>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 29.1 bits (62), Expect = 0.086
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 67  VIPICC*HTTQYINWMDKCNSKKWNWSLV 153
           V+ + C +  +Y+N++ K   KKWN +LV
Sbjct: 271 VVAVWCTNKEKYVNFVKKVLFKKWNLTLV 299


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 236 ELVLCATMLVRIALWFITNNN*NQNYKRTKDQFHFLELH 120
           EL+L A+    I +W +      Q ++R  D+F F+ +H
Sbjct: 269 ELILSASEDKTIRVWDLNRRTAVQTFRRDNDRFWFITVH 307


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 224 CATMLVRIALWFITNNN*NQNY--KRTKDQFHFLEL 123
           C   +VRI  WF+ N    +N+  K+ K   H  +L
Sbjct: 67  CFQQVVRIVYWFLGNQVIRENFSIKKRKPHNHIPQL 102


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 45  LSTFISLSDPYLLLAHY 95
           L T  +L+ PY +LAHY
Sbjct: 557 LGTNFTLASPYAILAHY 573


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -2

Query: 233 LVLCATMLV----RIALWFITNNN*NQNYKRTKDQFHFLE 126
           +VLC  + +     +AL F +N N N   K  K +++FL+
Sbjct: 360 MVLCGVVTIFSFSLVALIFCSNTNNNSTNKLWKIRWYFLD 399


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 20  CLDKVQPLSINLHISE*SLSAVSTLLNT*TGWINV 124
           C  + Q + +N  + E  +S +++LLN    W+++
Sbjct: 389 CALRAQAIEMNPELVEAIISYINSLLNQGMDWLDI 423


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 185 TNNN*NQNYKRTKD--QFHFLELHLSIQFMY 99
           +NNN N N   T D  +  +LELH +++  +
Sbjct: 539 SNNNNNNNNTNTDDDDKLAYLELHEALKLAF 569


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 185 TNNN*NQNYKRTKD--QFHFLELHLSIQFMY 99
           +NNN N N   T D  +  +LELH +++  +
Sbjct: 539 SNNNNNNNNTNTDDDDKLAYLELHEALKLAF 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,017,488
Number of Sequences: 5004
Number of extensions: 17086
Number of successful extensions: 33
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)