Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_K16
         (246 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0354 - 2550061-2551033,2551125-2551385,2553079-2553274,255...    27   2.8  
01_02_0110 + 11210174-11210292,11211635-11211752,11212426-112125...    25   8.5  

>06_01_0354 -
           2550061-2551033,2551125-2551385,2553079-2553274,
           2553443-2553632,2553750-2553983
          Length = 617

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 33  CNHYLSTFISLSDPYLLLAHYSI 101
           C+H++S   S ++PYLL   YS+
Sbjct: 544 CDHFVSQLKSKTNPYLLKCLYSL 566


>01_02_0110 +
           11210174-11210292,11211635-11211752,11212426-11212522,
           11212991-11213080,11213174-11213280,11213765-11213887,
           11214055-11214208,11214582-11214642,11214748-11215103,
           11216535-11218056,11218169-11218415
          Length = 997

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 97  QYINWMDKCNSKKWNWSL 150
           ++I+ M+KC SKK  W L
Sbjct: 166 EFIDIMNKCRSKKLMWKL 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,156,433
Number of Sequences: 37544
Number of extensions: 94441
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)